HHsearch alignment for GI: 254780827 and conserved domain: TIGR02788
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=96.13 E-value=0.0063 Score=39.64 Aligned_cols=56 Identities=29% Similarity=0.349 Sum_probs=34.7
Q ss_pred HHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCC-CEEEE---EECCCCC-CHHHH
Q ss_conf 99871677667876799952786667337999999999733898-68999---5088758-82688
Q gi|254780827|r 70 YNKFLNLKEESKIPFVVGITGSVAVGKSTFARILCILLQQISNF-KVSLI---TTDGFLF-PNAVL 130 (311)
Q Consensus 70 ~~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~-~V~li---s~DgF~~-~n~~l 130 (311)
T Consensus 147 ~~~Fl~~Ai~~~k--nIii~GGTgSGKTTf~---kal~~~IP~~ER~iTIED~~E~~~~hhpN~V~ 207 (328)
T TIGR02788 147 IKEFLRLAIASRK--NIIISGGTGSGKTTFL---KALVKEIPKDERLITIEDTRELFLPHHPNKVH 207 (328)
T ss_pred HHHHHHHHHHCCC--EEEEEECCCCHHHHHH---HHHHHCCCCCCCEEEEEEEECCCCCCCCCEEE
T ss_conf 8799999987389--1999906897189999---99973276225278885201147888986456