HHsearch alignment for GI: 254780827 and conserved domain: TIGR03375
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=96.57 E-value=0.00085 Score=45.52 Aligned_cols=103 Identities=21% Similarity=0.238 Sum_probs=51.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC------------------CCEEEEEECCCCCCHHHHHHHCHHHCCCC-----
Q ss_conf 9995278666733799999999973389------------------86899950887588268876000201898-----
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISN------------------FKVSLITTDGFLFPNAVLTANNLMQRKGF----- 141 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~------------------~~V~lis~DgF~~~n~~l~~~~l~~rkGf----- 141 (311)
T Consensus 493 ~vaIvG~sGsGKSTL~kll~Gl~~p~~G~i~idg~~~~~~~~~~~r~~i~~v~Q~~~lf~gTi~eNi~~~~-~~~~~~~i 571 (694)
T TIGR03375 493 KVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGA-PYADDEEI 571 (694)
T ss_pred EEEEEECCCCCHHHHHHHHCCCCCCCCCEEEECCEECCCCCHHHHHHHCEEECCCCCCCCCCHHHHHHCCC-CCCCHHHH
T ss_conf 89998058987889999855675899887998985425499999973021357677110746999984169-99999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC-CCEE-------EECCCCEEEEE
Q ss_conf 1331289999999974126640587404432256589-8369-------98689659970
Q gi|254780827|r 142 PESYDSNKLLTFLSDVKSGKKKVAVPRYSHSQYDILE-GEYD-------TIIQPDILLIE 193 (311)
Q Consensus 142 PeS~D~~~L~~~L~~lK~G~~~V~~PvYsh~~~D~vp-~~~~-------vi~~pdIIIvE 193 (311)
T Consensus 572 ~~a~~~a~l~~~I~~lp~g~~t---~i~e~--G~~LSgGqrQri~lARAl~~~p~ililD 626 (694)
T TIGR03375 572 LRAAELAGVTEFVRRHPDGLDM---QIGER--GRSLSGGQRQAVALARALLRDPPILLLD 626 (694)
T ss_pred HHHHHHHCCHHHHHHCCCCCCC---EECCC--CCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9999981979999718566787---74689--9946899999999999995799989997