HHsearch alignment for GI: 254780827 and conserved domain: TIGR03499

Probab=98.14  E-value=4.1e-05  Score=54.41  Aligned_cols=77  Identities=27%  Similarity=0.297  Sum_probs=54.3

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCCEEEEEECCCCCCHHHHHHHCHHHCCCCH--HHHHHHHHHHHHHHHHC
Q ss_conf             679995278666733799999999973-389868999508875882688760002018981--33128999999997412
Q gi|254780827|r   83 PFVVGITGSVAVGKSTFARILCILLQQ-ISNFKVSLITTDGFLFPNAVLTANNLMQRKGFP--ESYDSNKLLTFLSDVKS  159 (311)
Q Consensus        83 PfIIGIAG~~asGKST~Ar~L~~lL~~-~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfP--eS~D~~~L~~~L~~lK~  159 (311)
T Consensus       194 ~~vi~lvGPTGVGKTTTiAKLAa~~~l~~~~~~V~lIT~Dty-RigA~eQLk~ya~il~vp~~vv~~~~~l~~~l~~~~~  272 (282)
T TIGR03499       194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGKKKVALITTDTY-RIGAVEQLKTYAKILGVPVKVARDPKELAKALERLRD  272 (282)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC-CHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHCCC
T ss_conf             727999778887578899999999999738996799980777-6789999999999959748993999999999986579


Q ss_pred             C
Q ss_conf             6
Q gi|254780827|r  160 G  160 (311)
Q Consensus       160 G  160 (311)
T Consensus       273 ~  273 (282)
T TIGR03499       273 K  273 (282)
T ss_pred             C
T ss_conf             8