HHsearch alignment for GI: 254780827 and conserved domain: TIGR03522
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.91 E-value=0.0069 Score=39.34 Aligned_cols=108 Identities=16% Similarity=0.180 Sum_probs=51.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEE------------------EEECCCCCCHHHHHH-HC-HHHCCCCHHH
Q ss_conf 999527866673379999999997338986899------------------950887588268876-00-0201898133
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSL------------------ITTDGFLFPNAVLTA-NN-LMQRKGFPES 144 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~l------------------is~DgF~~~n~~l~~-~~-l~~rkGfPeS 144 (311)
T Consensus 30 i~gllGpNGAGKTTl~~~l~Gl~~p~-~G~i~i~G~~~~~~~~~~~~~ig~~pq~~~l~~~ltv~e~l~~~~~~~g~~~~ 108 (301)
T TIGR03522 30 IVGFLGPNGAGKSTTMKIITGYLPPD-SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQ 108 (301)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC-CCEEEECCEECCCCHHHHHHHCEEECCCCCCCCCCCHHHHHHHHHHHCCCCHH
T ss_conf 99999999981999999996795689-77799927513448799985376745556567888999999999997399989
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEE--CCCCCCCCCCCCCEEEECCCCEEEEEC
Q ss_conf 12899999999741266405874--044322565898369986896599706
Q gi|254780827|r 145 YDSNKLLTFLSDVKSGKKKVAVP--RYSHSQYDILEGEYDTIIQPDILLIEG 194 (311)
Q Consensus 145 ~D~~~L~~~L~~lK~G~~~V~~P--vYsh~~~D~vp~~~~vi~~pdIIIvEG 194 (311)
T Consensus 109 ~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~kqrl~la~aL~~~P~lliLDE 159 (301)
T TIGR03522 109 LLKQRVEEMIELVGLRP-EQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDE 159 (301)
T ss_pred HHHHHHHHHHHHHCCHH-HHCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 99999999998818856-6548276779988445998898707998999948