HHsearch alignment for GI: 254780827 and conserved domain: cd00009
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.49 E-value=0.058 Score=33.08 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=28.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 7679995278666733799999999973389868999508875
Q gi|254780827|r 82 IPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFL 124 (311)
Q Consensus 82 ~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~ 124 (311)
T Consensus 18 ~~~~ill~GppGtGKT~la~~ia~~~~~~-~~~~~~~~~~~~~ 59 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRP-GAPFLYLNASDLL 59 (151)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCC-CCCEEEEEHHHCC
T ss_conf 99808998999988659999999971213-7982785477704