HHsearch alignment for GI: 254780827 and conserved domain: cd01120
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.08 E-value=0.097 Score=31.57 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=25.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 999527866673379999999997338986899950887
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGF 123 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF 123 (311)
T Consensus 1 ~~li~g~~g~GKttl~~~~~~~~~~-~~~~~~~~~~ee~ 38 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDIEEE 38 (165)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCC
T ss_conf 9899989999899999999999876-3997999986664