HHsearch alignment for GI: 254780827 and conserved domain: cd01124
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.15 E-value=0.028 Score=35.22 Aligned_cols=34 Identities=26% Similarity=0.259 Sum_probs=23.8
Q ss_pred EEECCCCCCHHHHHH-HHHHHHHHCCCCCEEEEEECC
Q ss_conf 952786667337999-999999733898689995088
Q gi|254780827|r 87 GITGSVAVGKSTFAR-ILCILLQQISNFKVSLITTDG 122 (311)
Q Consensus 87 GIAG~~asGKST~Ar-~L~~lL~~~~~~~V~lis~Dg 122 (311)
T Consensus 3 Li~G~pGsGKT~~a~qfl~~~a~--~ge~~lyis~eE 37 (187)
T cd01124 3 LLSGGPGTGKTTFALQFLYAGLA--RGEPGLYVTLEE 37 (187)
T ss_pred EEEECCCCCHHHHHHHHHHHHHH--CCCCEEEEEECC
T ss_conf 58768999999999999999987--699789999507