HHsearch alignment for GI: 254780827 and conserved domain: cd01124

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.15  E-value=0.028  Score=35.22  Aligned_cols=34  Identities=26%  Similarity=0.259  Sum_probs=23.8

Q ss_pred             EEECCCCCCHHHHHH-HHHHHHHHCCCCCEEEEEECC
Q ss_conf             952786667337999-999999733898689995088
Q gi|254780827|r   87 GITGSVAVGKSTFAR-ILCILLQQISNFKVSLITTDG  122 (311)
Q Consensus        87 GIAG~~asGKST~Ar-~L~~lL~~~~~~~V~lis~Dg  122 (311)
T Consensus         3 Li~G~pGsGKT~~a~qfl~~~a~--~ge~~lyis~eE   37 (187)
T cd01124           3 LLSGGPGTGKTTFALQFLYAGLA--RGEPGLYVTLEE   37 (187)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHH--CCCCEEEEEECC
T ss_conf             58768999999999999999987--699789999507