HHsearch alignment for GI: 254780827 and conserved domain: cd01129
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.01 E-value=0.037 Score=34.40 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 999527866673379999999997338986899950
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITT 120 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~ 120 (311)
T Consensus 82 lilitGptGSGKtTtl---~a~l~~~~~~~~~i~ti 114 (264)
T cd01129 82 IILVTGPTGSGKTTTL---YSALSELNTPEKNIITV 114 (264)
T ss_pred EEEEECCCCCCHHHHH---HHHHHHHCCCCCEEEEE
T ss_conf 8999789999779999---99998643688508998