HHsearch alignment for GI: 254780827 and conserved domain: cd02026
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=100.00 E-value=3.2e-36 Score=265.17 Aligned_cols=178 Identities=24% Similarity=0.368 Sum_probs=145.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC-HHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 999527866673379999999997338986899950887588-2688760002018981331289999999974126640
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFP-NAVLTANNLMQRKGFPESYDSNKLLTFLSDVKSGKKK 163 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~-n~~l~~~~l~~rkGfPeS~D~~~L~~~L~~lK~G~~~ 163 (311)
T Consensus 1 IIgVaG~SGSGKTTv~~~i~~if---g~~~v~vI~~D~Yhr~dr~~r~~~~~t~--~~P~And~dll~~~l~~Lk~Gk-~ 74 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLF---GSDLVTVICLDDYHSLDRKGRKETGITA--LDPRANNFDLMYEQLKALKEGQ-A 74 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH---CCCCEEEEECCCCCCCCHHHHHHHCCCC--CCCCHHHHHHHHHHHHHHHCCC-C
T ss_conf 98997888786999999999985---8487699965777889989998718776--8975234999999999998599-5
Q ss_pred EEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 58740443225658983699868965997061003576545757774010002311577308899988799887888766
Q gi|254780827|r 164 VAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDIHRWYLNRFLKLRE 243 (311)
Q Consensus 164 V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~~wyi~Rf~~lr~ 243 (311)
T Consensus 75 i~~PvYdh~tg~~~~--~e~i~p~diII~EGLh~l~~~~----------lrdl~DLkIfVD~d~dlr~~rKI~RD~~ERG 142 (273)
T cd02026 75 IEKPIYNHVTGLIDP--PELIKPTKIVVIEGLHPLYDER----------VRELLDFSVYLDISDEVKFAWKIQRDMAERG 142 (273)
T ss_pred CCCCCCCCCCCCCCC--CEEECCCCEEEEECEECCCCHH----------HHHHHCEEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf 343222145896577--5650687479992200026688----------9866074688568764799998776676648
Q ss_pred HHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 520167779988605998999999999988631668999520131366499975899
Q gi|254780827|r 244 TAFLNPRSYFHHFTEISEEQSLKIAETAWNNINLPNLQHNILPTRKRADLILSKGED 300 (311)
Q Consensus 244 ~a~~~~~s~~~~y~~l~~~ea~~~a~~iW~~in~pnl~e~I~PTr~rADlIi~k~~~ 300 (311)
T Consensus 143 ---yS~E~------------V~~~----I~r-R~pDy~~yI~PQk~~ADI~iq~vPt 179 (273)
T cd02026 143 ---HSLED------------VLAS----IEA-RKPDFEAYIDPQKQYADVVIQVLPT 179 (273)
T ss_pred ---CCHHH------------HHHH----HHH-HHHHHHHHCCCCCEEEEEEEEECCC
T ss_conf ---89999------------9999----986-0478897507575001289995276