HHsearch alignment for GI: 254780827 and conserved domain: cd02029
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.90 E-value=1.1e-22 Score=173.37 Aligned_cols=185 Identities=17% Similarity=0.185 Sum_probs=141.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC-HHHHHHHCHH---HCCCC----HHHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997338986899950887588-2688760002---01898----133128999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFP-NAVLTANNLM---QRKGF----PESYDSNKLLTFLSD 156 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~-n~~l~~~~l~---~rkGf----PeS~D~~~L~~~L~~ 156 (311)
T Consensus 1 IIaVtGsSGAGtsTv~r~f~~IF~re-~v~a~vIegD~fHryDR~emk~~~~~a~~~g~~~ShfgPeAN~fd~Le~~f~~ 79 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFARE-GIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFRT 79 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 98993388884787999999987205-88528996786654678999999999986478766678444479999999999
Q ss_pred HHCCCCEEEEECCCCCCCCC-----CCCCE----EEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCH
Q ss_conf 41266405874044322565-----89836----9986896599706100357654575777401000231157730889
Q gi|254780827|r 157 VKSGKKKVAVPRYSHSQYDI-----LEGEY----DTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADK 227 (311)
Q Consensus 157 lK~G~~~V~~PvYsh~~~D~-----vp~~~----~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~ 227 (311)
T Consensus 80 y~e~g-~g~kr~Y~H~~~ea~~~~~~pGtFtpwe~l~~~tdlLfyEGLHg~v~t~-------~~dva~~vDL~IgVvP~v 151 (277)
T cd02029 80 YGETG-RGRSRYYLHSDEEAAPFNQEPGTFTPWEDLPEDTDLLFYEGLHGGVVTE-------GYNVAQHADLLVGVVPII 151 (277)
T ss_pred HHCCC-CCCCCEEECCCHHHHHCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCC-------CCCHHHHCCEEEEECCHH
T ss_conf 86689-8764243058213434279986548864558998469995787665674-------305687658665107447
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 99887998878887665201677799886059989999999999886316689995201313664999758
Q gi|254780827|r 228 RDIHRWYLNRFLKLRETAFLNPRSYFHHFTEISEEQSLKIAETAWNNINLPNLQHNILPTRKRADLILSKG 298 (311)
Q Consensus 228 ~~i~~wyi~Rf~~lr~~a~~~~~s~~~~y~~l~~~ea~~~a~~iW~~in~pnl~e~I~PTr~rADlIi~k~ 298 (311)
T Consensus 152 nLeWiqKI~RD~~eRG---------------yS~EaV~~tIlrR-----mpDyv~yI~PQfs~tdInfqrv 202 (277)
T cd02029 152 NLEWIQKIHRDTAERG---------------YSAEAVMDTILRR-----MPDYINYICPQFSRTDINFQRV 202 (277)
T ss_pred HHHHHHHHHHHHHHHC---------------CCHHHHHHHHHHC-----CCCHHHHCCCCCCCCCEEEEEC
T ss_conf 7343787750054309---------------9999999999853-----8405655378765554667766