HHsearch alignment for GI: 254780827 and conserved domain: cd02034
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=94.51 E-value=0.075 Score=32.34 Aligned_cols=36 Identities=36% Similarity=0.433 Sum_probs=30.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 9952786667337999999999733898689995088
Q gi|254780827|r 86 VGITGSVAVGKSTFARILCILLQQISNFKVSLITTDG 122 (311)
Q Consensus 86 IGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~Dg 122 (311)
T Consensus 2 ia~~GKGGvGKtt~~~~la~~l~~~-g~~vl~iD~Dp 37 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEK-GKPVLAIDADP 37 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-CCEEEEEECCC
T ss_conf 7898899774999999999999978-99699998989