HHsearch alignment for GI: 254780827 and conserved domain: cd03116
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.56 E-value=0.00074 Score=45.93 Aligned_cols=97 Identities=24% Similarity=0.372 Sum_probs=53.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 67999527866673379999999997338986899950887588268876000201898133128999999997412664
Q gi|254780827|r 83 PFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGFPESYDSNKLLTFLSDVKSGKK 162 (311)
Q Consensus 83 PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~D~~~L~~~L~~lK~G~~ 162 (311)
T Consensus 1 mkii~ivG~snSGKTTLi~kli~~l~~~-G~~V~~iKH~~H~f~---------~D~~G-kDS~r~~~---------AGA~ 60 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPALSAR-GLRVAVIKHDHHDFD---------IDTPG-KDSYRHRE---------AGAE 60 (159)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHC-CCEEEEEEECCCCCC---------CCCCC-CHHHHHHH---------CCCC
T ss_conf 9299999679999999999999999977-985989973476777---------77898-44177675---------2973
Q ss_pred EE--EEEC----CCCCCCCCCCC--CEEEECCCCEEEEECCHHCC
Q ss_conf 05--8740----44322565898--36998689659970610035
Q gi|254780827|r 163 KV--AVPR----YSHSQYDILEG--EYDTIIQPDILLIEGINVLQ 199 (311)
Q Consensus 163 ~V--~~Pv----Ysh~~~D~vp~--~~~vi~~pdIIIvEGi~vL~ 199 (311)
T Consensus 61 ~v~v~s~~~~~l~~~~~~~~~~~~~~~~~~~~~DlvlvEG~K~~~ 105 (159)
T cd03116 61 EVLVSSPRRWALIRELRDEPEPDLLLLLRLLDVDLVLVEGFKEEP 105 (159)
T ss_pred EEEEECCCEEEEEEECCCCCCCCHHHHHHCCCCCEEEEECCCCCC
T ss_conf 799975671887774468888729999626788899983466788