HHsearch alignment for GI: 254780827 and conserved domain: cd03225
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.74 E-value=0.0066 Score=39.49 Aligned_cols=73 Identities=29% Similarity=0.318 Sum_probs=39.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CC-----------------CCEEEEEECC--CCCCHHHHHHHCH-HHCCCCHH
Q ss_conf 99952786667337999999999733-89-----------------8689995088--7588268876000-20189813
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI-SN-----------------FKVSLITTDG--FLFPNAVLTANNL-MQRKGFPE 143 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~-~~-----------------~~V~lis~Dg--F~~~n~~l~~~~l-~~rkGfPe 143 (311)
T Consensus 29 i~~iiG~nGaGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ig~v~Q~p~~~~~~~tv~e~i~~~~~~~~~~~ 108 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPE 108 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEECCCCCHHHHHCCEEEEEECCHHHCCCCCHHHHHHHHHHHCCCCH
T ss_conf 99998899998999999996467798887789999999799899840389997783253055869999999999869999
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 31289999999974
Q gi|254780827|r 144 SYDSNKLLTFLSDV 157 (311)
Q Consensus 144 S~D~~~L~~~L~~l 157 (311)
T Consensus 109 ~~~~~~~~~~l~~~ 122 (211)
T cd03225 109 EEIEERVEEALELV 122 (211)
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999999986