HHsearch alignment for GI: 254780827 and conserved domain: cd03233
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.72 E-value=0.026 Score=35.48 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99952786667337999999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILL 107 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL 107 (311)
T Consensus 35 i~~llG~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999899998899999983787