HHsearch alignment for GI: 254780827 and conserved domain: cd03236
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.92 E-value=0.0035 Score=41.31 Aligned_cols=24 Identities=42% Similarity=0.613 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
T Consensus 28 i~gLiGpNGaGKSTLlk~i~Gll~ 51 (255)
T cd03236 28 VLGLVGPNGIGKSTALKILAGKLK 51 (255)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999989999709999999967986