HHsearch alignment for GI: 254780827 and conserved domain: cd03237

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.60  E-value=0.0055  Score=40.01  Aligned_cols=24  Identities=42%  Similarity=0.787  Sum_probs=21.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf             999527866673379999999997
Q gi|254780827|r   85 VVGITGSVAVGKSTFARILCILLQ  108 (311)
Q Consensus        85 IIGIAG~~asGKST~Ar~L~~lL~  108 (311)
T Consensus        27 iv~liGpNGaGKSTLlk~l~Gll~   50 (246)
T cd03237          27 VIGILGPNGIGKTTFIKMLAGVLK   50 (246)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             999997999769999999977878