HHsearch alignment for GI: 254780827 and conserved domain: cd03240
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=94.19 E-value=0.035 Score=34.54 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99952786667337999999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILL 107 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL 107 (311)
T Consensus 24 itaivG~NGaGKSTLl~~i~~~l 46 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALKYAL 46 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 89999899999999999986304