HHsearch alignment for GI: 254780827 and conserved domain: cd03249
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.29 E-value=0.00013 Score=51.05 Aligned_cols=48 Identities=23% Similarity=0.407 Sum_probs=35.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-C-----------------CCCEEEEEECCCCCCHHHHHH
Q ss_conf 99952786667337999999999733-8-----------------986899950887588268876
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI-S-----------------NFKVSLITTDGFLFPNAVLTA 132 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~-~-----------------~~~V~lis~DgF~~~n~~l~~ 132 (311)
T Consensus 31 ~iaIvG~sGsGKSTLl~ll~gl~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eN 96 (238)
T cd03249 31 TVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAEN 96 (238)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCEECCCCHHHH
T ss_conf 999999999989999999823861885189999999231899999740699915896727529999