>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Probab=97.15 E-value=0.00097 Score=45.13 Aligned_cols=69 Identities=22% Similarity=0.307 Sum_probs=42.4 Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC------------------CCCEEEEEECCCCCCHHHHHHHCHHHCCCCHHHHH Q ss_conf 999527866673379999999997338------------------98689995088758826887600020189813312 Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQIS------------------NFKVSLITTDGFLFPNAVLTANNLMQRKGFPESYD 146 (311) Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~------------------~~~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~D 146 (311) T Consensus 30 ~i~IvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNI~----~g~~~-~~ 104 (234) T cd03251 30 TVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIA----YGRPG-AT 104 (234) T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCEECCCCHHHHHH----CCCCC-CC T ss_conf 99999899982999999996676678868999999966089999973179993689471645999961----47989-99 Q ss_pred HHHHHHHHHHHH Q ss_conf 899999999741 Q gi|254780827|r 147 SNKLLTFLSDVK 158 (311) Q Consensus 147 ~~~L~~~L~~lK 158 (311) T Consensus 105 ~~~i~~~l~~~~ 116 (234) T cd03251 105 REEVEEAARAAN 116 (234) T ss_pred HHHHHHHHHHHH T ss_conf 999999999863

HHsearch alignment for GI: 254780827 and conserved domain: cd03251