HHsearch alignment for GI: 254780827 and conserved domain: cd03252
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.06 E-value=0.00048 Score=47.21 Aligned_cols=48 Identities=25% Similarity=0.433 Sum_probs=33.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-C-----------------CCCEEEEEECCCCCCHHHHHH
Q ss_conf 99952786667337999999999733-8-----------------986899950887588268876
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI-S-----------------NFKVSLITTDGFLFPNAVLTA 132 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~-~-----------------~~~V~lis~DgF~~~n~~l~~ 132 (311)
T Consensus 30 ~vaivG~sGsGKSTll~ll~gl~~p~~G~I~i~g~di~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eN 95 (237)
T cd03252 30 VVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDN 95 (237)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCHHHH
T ss_conf 999999999859999999967765798789999999551899999860189958771557828988