HHsearch alignment for GI: 254780827 and conserved domain: cd03266
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.69 E-value=0.016 Score=36.90 Aligned_cols=25 Identities=40% Similarity=0.538 Sum_probs=21.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 7999527866673379999999997
Q gi|254780827|r 84 FVVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 84 fIIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
T Consensus 32 ei~gllG~NGaGKSTllk~i~Gl~~ 56 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGLLE 56 (218)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 2999999999849999999977977