HHsearch alignment for GI: 254780827 and conserved domain: cd03288
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.00 E-value=0.0012 Score=44.41 Aligned_cols=75 Identities=20% Similarity=0.309 Sum_probs=45.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-C-----------------CCCEEEEEECCCCCCHHHHHHHCHHHCCCC-----
Q ss_conf 99952786667337999999999733-8-----------------986899950887588268876000201898-----
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI-S-----------------NFKVSLITTDGFLFPNAVLTANNLMQRKGF----- 141 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~-~-----------------~~~V~lis~DgF~~~n~~l~~~~l~~rkGf----- 141 (311)
T Consensus 49 ~vaIvG~sGsGKSTL~~ll~gl~~p~~G~I~idg~di~~~~~~~lr~~i~~v~Q~~~lf~~Ti~~Ni~--~~~~~~~~~i 126 (257)
T cd03288 49 KVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLD--PECKCTDDRL 126 (257)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEHHHCCHHHHHHHEEEEECCCCCCCCHHHHCCC--CCCCCCHHHH
T ss_conf 99999999981999999996056678888999989968799999975057994567343613554137--5667689999
Q ss_pred HHHHHHHHHHHHHHHHHCCC
Q ss_conf 13312899999999741266
Q gi|254780827|r 142 PESYDSNKLLTFLSDVKSGK 161 (311)
Q Consensus 142 PeS~D~~~L~~~L~~lK~G~ 161 (311)
T Consensus 127 ~~al~~~~l~~~i~~lp~gl 146 (257)
T cd03288 127 WEALEIAQLKNMVKSLPGGL 146 (257)
T ss_pred HHHHHHHHHHHHHHHCCCCC
T ss_conf 99999962379997375898