HHsearch alignment for GI: 254780827 and conserved domain: cd03293
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.97 E-value=0.0021 Score=42.92 Aligned_cols=103 Identities=24% Similarity=0.369 Sum_probs=59.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-------------CCCCEEEEEECCCCCCH-HHHHH--HCHHHCCCCHHHHHHH
Q ss_conf 99952786667337999999999733-------------89868999508875882-68876--0002018981331289
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI-------------SNFKVSLITTDGFLFPN-AVLTA--NNLMQRKGFPESYDSN 148 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~-------------~~~~V~lis~DgF~~~n-~~l~~--~~l~~rkGfPeS~D~~ 148 (311)
T Consensus 32 ~~~iiGpsGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~ig~vfQ~~~L~p~~tv~eni~~~l-~~~~~~~~~~~~ 110 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGL-ELQGVPKAEARE 110 (220)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHH-HHCCCCHHHHHH
T ss_conf 9999999995799999999759998873899999967888988799924885377887999998899-865999899999
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEE-------EECCCCEEEEEC
Q ss_conf 9999999741266405874044322565898369-------986896599706
Q gi|254780827|r 149 KLLTFLSDVKSGKKKVAVPRYSHSQYDILEGEYD-------TIIQPDILLIEG 194 (311)
Q Consensus 149 ~L~~~L~~lK~G~~~V~~PvYsh~~~D~vp~~~~-------vi~~pdIIIvEG 194 (311)
T Consensus 111 ~v~~~l~~~gL~~--~-~~~~p~---~LSGGqkQRvaiARaL~~~P~llllDE 157 (220)
T cd03293 111 RAEELLELVGLSG--F-ENAYPH---QLSGGMRQRVALARALAVDPDVLLLDE 157 (220)
T ss_pred HHHHHHHHCCCHH--H-HHCCHH---HCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 9999999878954--7-618931---299999999999999866999999808