HHsearch alignment for GI: 254780827 and conserved domain: cd03293

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.97  E-value=0.0021  Score=42.92  Aligned_cols=103  Identities=24%  Similarity=0.369  Sum_probs=59.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHC-------------CCCCEEEEEECCCCCCH-HHHHH--HCHHHCCCCHHHHHHH
Q ss_conf             99952786667337999999999733-------------89868999508875882-68876--0002018981331289
Q gi|254780827|r   85 VVGITGSVAVGKSTFARILCILLQQI-------------SNFKVSLITTDGFLFPN-AVLTA--NNLMQRKGFPESYDSN  148 (311)
Q Consensus        85 IIGIAG~~asGKST~Ar~L~~lL~~~-------------~~~~V~lis~DgF~~~n-~~l~~--~~l~~rkGfPeS~D~~  148 (311)
T Consensus        32 ~~~iiGpsGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~ig~vfQ~~~L~p~~tv~eni~~~l-~~~~~~~~~~~~  110 (220)
T cd03293          32 FVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGL-ELQGVPKAEARE  110 (220)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHH-HHCCCCHHHHHH
T ss_conf             9999999995799999999759998873899999967888988799924885377887999998899-865999899999


Q ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEE-------EECCCCEEEEEC
Q ss_conf             9999999741266405874044322565898369-------986896599706
Q gi|254780827|r  149 KLLTFLSDVKSGKKKVAVPRYSHSQYDILEGEYD-------TIIQPDILLIEG  194 (311)
Q Consensus       149 ~L~~~L~~lK~G~~~V~~PvYsh~~~D~vp~~~~-------vi~~pdIIIvEG  194 (311)
T Consensus       111 ~v~~~l~~~gL~~--~-~~~~p~---~LSGGqkQRvaiARaL~~~P~llllDE  157 (220)
T cd03293         111 RAEELLELVGLSG--F-ENAYPH---QLSGGMRQRVALARALAVDPDVLLLDE  157 (220)
T ss_pred             HHHHHHHHCCCHH--H-HHCCHH---HCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             9999999878954--7-618931---299999999999999866999999808