HHsearch alignment for GI: 254780827 and conserved domain: cd03294

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.48  E-value=0.01  Score=38.26  Aligned_cols=103  Identities=26%  Similarity=0.336  Sum_probs=57.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH--------------CC--------CCCEEEEEECCCCCCHHH-HH--HHCHHHCC
Q ss_conf             9995278666733799999999973--------------38--------986899950887588268-87--60002018
Q gi|254780827|r   85 VVGITGSVAVGKSTFARILCILLQQ--------------IS--------NFKVSLITTDGFLFPNAV-LT--ANNLMQRK  139 (311)
Q Consensus        85 IIGIAG~~asGKST~Ar~L~~lL~~--------------~~--------~~~V~lis~DgF~~~n~~-l~--~~~l~~rk  139 (311)
T Consensus        52 ~~~ivG~SGsGKSTLLr~i~GL~~p~~G~I~~~G~~i~~~~~~~l~~~r~~~igmVFQ~~aL~P~ltV~eNV~~~L~-~~  130 (269)
T cd03294          52 IFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLE-VQ  130 (269)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHH-HC
T ss_conf             99999899848999999997599999759999999999999899988525646999615754767879999868888-52


Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEE-------EECCCCEEEEEC
Q ss_conf             9813312899999999741266405874044322565898369-------986896599706
Q gi|254780827|r  140 GFPESYDSNKLLTFLSDVKSGKKKVAVPRYSHSQYDILEGEYD-------TIIQPDILLIEG  194 (311)
Q Consensus       140 GfPeS~D~~~L~~~L~~lK~G~~~V~~PvYsh~~~D~vp~~~~-------vi~~pdIIIvEG  194 (311)
T Consensus       131 ~~~~~e~~~rv~e~L~~vgL~--~-~~~~~P~qL---SGGq~QRVaIARALa~~P~iLLlDE  186 (269)
T cd03294         131 GVPRAEREERAAEALELVGLE--G-WEHKYPDEL---SGGMQQRVGLARALAVDPDILLMDE  186 (269)
T ss_pred             CCCHHHHHHHHHHHHHHCCCH--H-HHHCCHHHH---CHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf             899789999999999867986--7-775696784---9488889999999863998999758