HHsearch alignment for GI: 254780827 and conserved domain: cd03295

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.04  E-value=0.006  Score=39.77  Aligned_cols=73  Identities=18%  Similarity=0.217  Sum_probs=40.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH--------------CC----CCCEEEEEECCCCCCHHH-HHHHCH-HHCCCCHHH
Q ss_conf             9995278666733799999999973--------------38----986899950887588268-876000-201898133
Q gi|254780827|r   85 VVGITGSVAVGKSTFARILCILLQQ--------------IS----NFKVSLITTDGFLFPNAV-LTANNL-MQRKGFPES  144 (311)
Q Consensus        85 IIGIAG~~asGKST~Ar~L~~lL~~--------------~~----~~~V~lis~DgF~~~n~~-l~~~~l-~~rkGfPeS  144 (311)
T Consensus        29 ~~~ilGpSG~GKSTllr~i~gl~~p~~G~I~i~g~~i~~~~~~~lrr~ig~vfQ~~~Lfp~ltV~eNi~~~~~~~~~~~~  108 (242)
T cd03295          29 FLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKE  108 (242)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCHH
T ss_conf             99999999956999999997599998159999999999999789738867991799758888299999999997599999


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             1289999999974
Q gi|254780827|r  145 YDSNKLLTFLSDV  157 (311)
Q Consensus       145 ~D~~~L~~~L~~l  157 (311)
T Consensus       109 ~~~~rv~ell~~v  121 (242)
T cd03295         109 KIRERADELLALV  121 (242)
T ss_pred             HHHHHHHHHHHHC
T ss_conf             9999999999874