HHsearch alignment for GI: 254780827 and conserved domain: cd03295
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.04 E-value=0.006 Score=39.77 Aligned_cols=73 Identities=18% Similarity=0.217 Sum_probs=40.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--------------CC----CCCEEEEEECCCCCCHHH-HHHHCH-HHCCCCHHH
Q ss_conf 9995278666733799999999973--------------38----986899950887588268-876000-201898133
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQ--------------IS----NFKVSLITTDGFLFPNAV-LTANNL-MQRKGFPES 144 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~--------------~~----~~~V~lis~DgF~~~n~~-l~~~~l-~~rkGfPeS 144 (311)
T Consensus 29 ~~~ilGpSG~GKSTllr~i~gl~~p~~G~I~i~g~~i~~~~~~~lrr~ig~vfQ~~~Lfp~ltV~eNi~~~~~~~~~~~~ 108 (242)
T cd03295 29 FLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKE 108 (242)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCHH
T ss_conf 99999999956999999997599998159999999999999789738867991799758888299999999997599999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 1289999999974
Q gi|254780827|r 145 YDSNKLLTFLSDV 157 (311)
Q Consensus 145 ~D~~~L~~~L~~l 157 (311)
T Consensus 109 ~~~~rv~ell~~v 121 (242)
T cd03295 109 KIRERADELLALV 121 (242)
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999999874