HHsearch alignment for GI: 254780827 and conserved domain: cd03296
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.07 E-value=0.0052 Score=40.19 Aligned_cols=43 Identities=23% Similarity=0.335 Sum_probs=29.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC----------------CCCCEEEEEECCCCCCH
Q ss_conf 99952786667337999999999733----------------89868999508875882
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI----------------SNFKVSLITTDGFLFPN 127 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~----------------~~~~V~lis~DgF~~~n 127 (311)
T Consensus 30 ~~~iiGpSGsGKSTll~~i~Gl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~Lfp~ 88 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRH 88 (239)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEECCCCCCCCC
T ss_conf 99999999977999999997699998639999999999999656776798178210679