HHsearch alignment for GI: 254780827 and conserved domain: pfam02456
>pfam02456 Adeno_IVa2 Adenovirus IVa2 protein. IVa2 protein can interact with the adenoviral packaging signal and that this interaction involves DNA sequences that have previously been demonstrated to be required for packaging. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter.
Probab=94.71 E-value=0.17 Score=29.84 Aligned_cols=67 Identities=22% Similarity=0.248 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCC------CCCCCEEEEEECCCCCCHHHHHHHH-H-HHHHHCCCCCEEEE-EECCC
Q ss_conf 999999999998999998716776------6787679995278666733799999-9-99973389868999-50887
Q gi|254780827|r 55 LLLINVNSAKITCHQYNKFLNLKE------ESKIPFVVGITGSVAVGKSTFARIL-C-ILLQQISNFKVSLI-TTDGF 123 (311)
Q Consensus 55 ll~~~~~~~~~~~~~~~~fl~~~~------~~k~PfIIGIAG~~asGKST~Ar~L-~-~lL~~~~~~~V~li-s~DgF 123 (311)
T Consensus 54 l~~~~~-~~~~~~n~~~~~L~~dG~~~SLNy~~qP~I~vVYGPTG~GKSQLlRNlis~~lI~P~P-ETVfFItPq~~m 129 (370)
T pfam02456 54 LLEAME-AVHGQLNEASRYLRPDGELPSLNYGLQPVIGVVYGPTGCGKSQLLRNLLSCQLIQPIP-ETVFFITPQKDM 129 (370)
T ss_pred HHHHHH-HHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCC-CEEEEECCCCCC
T ss_conf 999999-9999998631540668965755467874499998899877899999987346677999-728997677786