HHsearch alignment for GI: 254780827 and conserved domain: pfam05496
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=94.76 E-value=0.031 Score=34.92 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=21.0
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 8767999527866673379999999997
Q gi|254780827|r 81 KIPFVVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 81 k~PfIIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
T Consensus 49 ~l~h~l-f~GPPG~GKTTlAriiAk~~~ 75 (234)
T pfam05496 49 ALDHVL-LYGPPGLGKTTLANIIANEMG 75 (234)
T ss_pred CCCEEE-EECCCCCCHHHHHHHHHHHHC
T ss_conf 766278-878999988899999998408