HHsearch alignment for GI: 254780827 and conserved domain: pfam08298

>pfam08298 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

Probab=95.32  E-value=0.06  Score=32.97  Aligned_cols=54  Identities=24%  Similarity=0.335  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             9999899999999999999998999998716776678767999527866673379999999997338
Q gi|254780827|r   45 IYKIYFPLSHLLLINVNSAKITCHQYNKFLNLKEESKIPFVVGITGSVAVGKSTFARILCILLQQIS  111 (311)
Q Consensus        45 v~~iy~pl~~ll~~~~~~~~~~~~~~~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~  111 (311)
T Consensus        60 ffGme~~i~~iV~~~ksAA~----------g~e~~-kq--IllL~GPVGsGKSsl~e~LK~glE~y~  113 (358)
T pfam08298        60 FFGMEETIERIVNYFRHAAQ----------GLEER-KQ--ILYLLGPVGGGKSSLAERLKKLLELVP  113 (358)
T ss_pred             CCCHHHHHHHHHHHHHHHHH----------CCCCC-EE--EEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf             00159999999999999972----------36721-05--899977898775899999998720586