HHsearch alignment for GI: 254780828 and conserved domain: TIGR03633
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=99.97 E-value=3.3e-30 Score=208.70 Aligned_cols=173 Identities=21% Similarity=0.146 Sum_probs=145.5
Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCC--CCCHH
Q ss_conf 3717999997997999813654505367744510579815975999731305889999999999999853665--63067
Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQL--LRSSV 91 (190)
Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~~--~~~~~ 91 (190)
T Consensus 28 ~GtT~vgi~~kdgVVlaadkr~~-~~li~~~~~~KI~~I~~~I~~~-~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~v~ 105 (229)
T TIGR03633 28 RGTTAVGIKTKDGVVLAVDKRIT-SKLVEPSSIEKIFKIDDHIGAA-TSGLVADARVLIDRARIEAQINRLTYGEPIDVE 105 (229)
T ss_pred CCCCEEEEEECCEEEEEEEECCC-CCCCCCCCCCEEEEECCCEEEE-ECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 49888999979999999950577-7654577534088842866898-604665389999999999998788738888699
Q ss_pred HHHHHHHHHHH-------HHHCCC--EEEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHH---
Q ss_conf 99999976112-------220131--045137876469980586311413279960642345788985207899989---
Q gi|254780828|r 92 ELAKDWRMDKY-------LRNLEA--MILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAE--- 159 (190)
Q Consensus 92 ~~~~~~~~~~y-------~~~~~~--~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~--- 159 (190)
T Consensus 106 ~la~~ls~~~q~~tq~~~~RP~g~~lii~G~D~~g~~Ly~~dpsG~~~~~~~~aiGsgs~~a~~~Le~~y~~~mt~eea~ 185 (229)
T TIGR03633 106 TLAKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGALLEYKATAIGAGRQAVTEFLEKEYREDLSLDEAI 185 (229)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCEEEEEECCCCEEECCEEEECCCHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 99999999999985445757764058999984899879999189408851479978866999999997656899999999
Q ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEECCC
Q ss_conf 999999997540110225956999994178
Q gi|254780828|r 160 EIARKAMSIAADICVYTNHNIVLETLKVGD 189 (190)
Q Consensus 160 ela~~Al~~A~erDvyTgd~i~i~~i~~~~ 189 (190)
T Consensus 186 ~la~~al~~~~~-~~~s~~~iev~iit~~~ 214 (229)
T TIGR03633 186 ELALKALYSAVE-DKLTPENVEVAYITVED 214 (229)
T ss_pred HHHHHHHHHHHH-CCCCCCCEEEEEEECCC
T ss_conf 999999999973-67998978999998589