HHsearch alignment for GI: 254780828 and conserved domain: TIGR03634

>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00  E-value=1.1e-34  Score=236.65  Aligned_cols=173  Identities=23%  Similarity=0.159  Sum_probs=153.9

Q ss_pred             CEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHC--CCCCCCHHH
Q ss_conf             717999997997999813654505367744510579815975999731305889999999999999853--665630679
Q gi|254780828|r   15 ATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYP--NQLLRSSVE   92 (190)
Q Consensus        15 GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~--~~~~~~~~~   92 (190)
T Consensus         1 GtT~vgi~~~dgVvlaaD~r~s~~~~i~~~~~~Ki~~i~~~i~~~-~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~   79 (185)
T TIGR03634         1 GTTTVGIKCKDGVVLAADRRASMGNFVASKNAKKVFQIDDYIAIT-IAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKA   79 (185)
T ss_pred             CCCEEEEEECCEEEEEECCCCCCCCEEECCCCCEEEEECCCEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf             965999998999999998886668775258656499937978999-6456899999999999999986997399988999


Q ss_pred             HHHHHHHHHHHHHCCCE-----EEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHHH---HHHH
Q ss_conf             99999761122201310-----451378764699805863114132799606423457889852078999899---9999
Q gi|254780828|r   93 LAKDWRMDKYLRNLEAM-----ILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAEE---IARK  164 (190)
Q Consensus        93 ~~~~~~~~~y~~~~~~~-----~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~e---la~~  164 (190)
T Consensus        80 ~a~~l~~~~~~~~~~P~~v~~l~~G~D~~gp~Ly~~D~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~mt~eea~~l~~~  159 (185)
T TIGR03634        80 LATLLSNILNSNRFFPYIVQLLVGGVDEDGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSLEEAKKLAVR  159 (185)
T ss_pred             HHHHHHHHHHHCCCCCCEEEEEEEEEECCCCEEEEECCCEEEEECCEEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf             99999999873177750017999999489988999989887998786886135799999998454799999999999999


Q ss_pred             HHHHHHCCCEEECCCEEEEEEECC
Q ss_conf             999754011022595699999417
Q gi|254780828|r  165 AMSIAADICVYTNHNIVLETLKVG  188 (190)
Q Consensus       165 Al~~A~erDvyTgd~i~i~~i~~~  188 (190)
T Consensus       160 ~l~~~~~rd~~sg~~~~v~iv~kd  183 (185)
T TIGR03634       160 AIKSAIERDVASGDGIDVAVITKD  183 (185)
T ss_pred             HHHHHHHHCCCCCCEEEEEEECCC
T ss_conf             999999846888992899998898