HHsearch alignment for GI: 254780828 and conserved domain: TIGR03634
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=1.1e-34 Score=236.65 Aligned_cols=173 Identities=23% Similarity=0.159 Sum_probs=153.9
Q ss_pred CEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHC--CCCCCCHHH
Q ss_conf 717999997997999813654505367744510579815975999731305889999999999999853--665630679
Q gi|254780828|r 15 ATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYP--NQLLRSSVE 92 (190)
Q Consensus 15 GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~--~~~~~~~~~ 92 (190)
T Consensus 1 GtT~vgi~~~dgVvlaaD~r~s~~~~i~~~~~~Ki~~i~~~i~~~-~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~ 79 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADRRASMGNFVASKNAKKVFQIDDYIAIT-IAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKA 79 (185)
T ss_pred CCCEEEEEECCEEEEEECCCCCCCCEEECCCCCEEEEECCCEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 965999998999999998886668775258656499937978999-6456899999999999999986997399988999
Q ss_pred HHHHHHHHHHHHHCCCE-----EEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHHH---HHHH
Q ss_conf 99999761122201310-----451378764699805863114132799606423457889852078999899---9999
Q gi|254780828|r 93 LAKDWRMDKYLRNLEAM-----ILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAEE---IARK 164 (190)
Q Consensus 93 ~~~~~~~~~y~~~~~~~-----~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~e---la~~ 164 (190)
T Consensus 80 ~a~~l~~~~~~~~~~P~~v~~l~~G~D~~gp~Ly~~D~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~mt~eea~~l~~~ 159 (185)
T TIGR03634 80 LATLLSNILNSNRFFPYIVQLLVGGVDEDGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSLEEAKKLAVR 159 (185)
T ss_pred HHHHHHHHHHHCCCCCCEEEEEEEEEECCCCEEEEECCCEEEEECCEEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 99999999873177750017999999489988999989887998786886135799999998454799999999999999
Q ss_pred HHHHHHCCCEEECCCEEEEEEECC
Q ss_conf 999754011022595699999417
Q gi|254780828|r 165 AMSIAADICVYTNHNIVLETLKVG 188 (190)
Q Consensus 165 Al~~A~erDvyTgd~i~i~~i~~~ 188 (190)
T Consensus 160 ~l~~~~~rd~~sg~~~~v~iv~kd 183 (185)
T TIGR03634 160 AIKSAIERDVASGDGIDVAVITKD 183 (185)
T ss_pred HHHHHHHHCCCCCCEEEEEEECCC
T ss_conf 999999846888992899998898