HHsearch alignment for GI: 254780828 and conserved domain: cd03752
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.97 E-value=2.6e-29 Score=203.16 Aligned_cols=171 Identities=21% Similarity=0.112 Sum_probs=145.4
Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--CCCCCHH
Q ss_conf 37179999979979998136545053677445105798159759997313058899999999999998536--6563067
Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--QLLRSSV 91 (190)
Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~~~~~~~ 91 (190)
T Consensus 28 ~G~T~Vgik~kdgVVlaadkr~~s~l~~~~~~~~Ki~~I~~~ig~~-~sG~~~D~~~lv~~~r~~a~~~~~~~g~~i~v~ 106 (213)
T cd03752 28 HAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACA-VAGITSDANILINYARLIAQRYLYSYQEPIPVE 106 (213)
T ss_pred CCCCEEEEEECCEEEEEEECCCCCCCCCCCCCCCCEEEECCCEEEE-EECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 4797899997999999996136776642777632089953876899-722554889999999999999999809964299
Q ss_pred HHHHHHHHHH-------HHHHCCCE--EEECCC-CCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHHH-
Q ss_conf 9999997611-------22201310--451378-764699805863114132799606423457889852078999899-
Q gi|254780828|r 92 ELAKDWRMDK-------YLRNLEAM--ILIADK-TITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAEE- 160 (190)
Q Consensus 92 ~~~~~~~~~~-------y~~~~~~~--~~~~~~-~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~e- 160 (190)
T Consensus 107 ~la~~ls~~~q~~t~~~~~RP~gvs~ii~G~D~~~g~~Ly~~dpsG~~~~~~a~aiGsgs~~a~~~LEk~y~~~mt~eea 186 (213)
T cd03752 107 QLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKATAIGNNNQAAQSLLKQDYKDDMTLEEA 186 (213)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHCCCCCCHHHH
T ss_conf 99999999999873545625533489999880799946999889866872228980786499999998754489999999
Q ss_pred --HHHHHHHHHHCCCEEECCCEEEEEE
Q ss_conf --9999999754011022595699999
Q gi|254780828|r 161 --IARKAMSIAADICVYTNHNIVLETL 185 (190)
Q Consensus 161 --la~~Al~~A~erDvyTgd~i~i~~i 185 (190)
T Consensus 187 i~lai~al~~~~~~~~~~~~~iei~vi 213 (213)
T cd03752 187 LALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 999999999997043688885799979