HHsearch alignment for GI: 254780828 and conserved domain: cd03753
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.96 E-value=4.3e-28 Score=195.47 Aligned_cols=169 Identities=17% Similarity=0.120 Sum_probs=139.7
Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCC--CCCHH
Q ss_conf 3717999997997999813654505367744510579815975999731305889999999999999853665--63067
Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQL--LRSSV 91 (190)
Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~~--~~~~~ 91 (190)
T Consensus 26 ~GtT~Vgik~~dgVVla~~kr~~s-~l~~~~~~~Ki~~I~~~i~~~-~sG~~~D~~~lv~~~r~e~~~~~~~~~~~i~v~ 103 (213)
T cd03753 26 LGSTAIGIKTKEGVVLAVEKRITS-PLMEPSSVEKIMEIDDHIGCA-MSGLIADARTLIDHARVEAQNHRFTYNEPMTVE 103 (213)
T ss_pred CCCCEEEEEECCEEEEEEECCCCC-CCCCCCCCCEEEEECCCEEEE-ECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 088789999799999999515776-452454004288834858999-613563299999999999999999739999899
Q ss_pred HHHHHHHHHHH------------HHHCCC--EEEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCC
Q ss_conf 99999976112------------220131--0451378764699805863114132799606423457889852078999
Q gi|254780828|r 92 ELAKDWRMDKY------------LRNLEA--MILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNS 157 (190)
Q Consensus 92 ~~~~~~~~~~y------------~~~~~~--~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~s 157 (190)
T Consensus 104 ~l~~~ls~l~~~~~~~~~~~~~~~RPfgvs~li~G~D~~gp~Ly~~dpsG~~~~~~~~aiG~gs~~a~~~Le~~y~~~lt 183 (213)
T cd03753 104 SVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDENGPQLFHTDPSGTFTRCDAKAIGSGSEGAQSSLQEKYHKDMT 183 (213)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCEEEEECCCCCEEEECEEEECCCHHHHHHHHHHHCCCCCC
T ss_conf 99999999999985122221002677522899999839988899988993588108899898879999999985569989
Q ss_pred HHH---HHHHHHHHHHCCCEEECCCEEEEEE
Q ss_conf 899---9999999754011022595699999
Q gi|254780828|r 158 AEE---IARKAMSIAADICVYTNHNIVLETL 185 (190)
Q Consensus 158 a~e---la~~Al~~A~erDvyTgd~i~i~~i 185 (190)
T Consensus 184 ~eeai~lai~aL~~~~~-~~~~~~~ieva~i 213 (213)
T cd03753 184 LEEAEKLALSILKQVME-EKLNSTNVELATV 213 (213)
T ss_pred HHHHHHHHHHHHHHHHH-CCCCCCCEEEEEC
T ss_conf 99999999999999985-3789787799979