HHsearch alignment for GI: 254780828 and conserved domain: cd03755
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.96 E-value=1.4e-27 Score=192.20 Aligned_cols=167 Identities=18% Similarity=0.102 Sum_probs=138.3
Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCC--CCCCHH
Q ss_conf 371799999799799981365450536774451057981597599973130588999999999999985366--563067
Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQ--LLRSSV 91 (190)
Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~--~~~~~~ 91 (190)
T Consensus 26 ~GtT~vGi~~kdgVVlaa~kr~~~-~l~~~~~~~KI~~I~~~i~~~-~aG~~~D~~~lv~~~r~ea~~~~~~~~~~i~v~ 103 (207)
T cd03755 26 KGTTAVGVRGKDCVVLGVEKKSVA-KLQDPRTVRKICMLDDHVCLA-FAGLTADARVLINRARLECQSHRLTVEDPVTVE 103 (207)
T ss_pred CCCCEEEEEECCEEEEEEECCCCH-HHCCCCCCCEEEECCCCEEEE-EEECCHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 088789999799999999515723-312774203488879988999-963648699999999999999999719985099
Q ss_pred HHHHHHHHHHH-------HHHCCCE--EEECCCC-CCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHHH-
Q ss_conf 99999976112-------2201310--4513787-64699805863114132799606423457889852078999899-
Q gi|254780828|r 92 ELAKDWRMDKY-------LRNLEAM--ILIADKT-ITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAEE- 160 (190)
Q Consensus 92 ~~~~~~~~~~y-------~~~~~~~--~~~~~~~-~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~e- 160 (190)
T Consensus 104 ~la~~ls~~~q~~t~~~~~RP~gv~~li~G~D~~~~p~Ly~~dpsG~~~~~~~~AiGsgs~~a~~~LE~~y~~~mt~eea 183 (207)
T cd03755 104 YITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAIGRNSKTVREFLEKNYKEEMTRDDT 183 (207)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCCEECCCEEEECCCHHHHHHHHHHHCCCCCCHHHH
T ss_conf 99999999999985578754643589999982899978999858876761568998998099999999646699899999
Q ss_pred --HHHHHHHHHHCCCEEECCCEEEEEE
Q ss_conf --9999999754011022595699999
Q gi|254780828|r 161 --IARKAMSIAADICVYTNHNIVLETL 185 (190)
Q Consensus 161 --la~~Al~~A~erDvyTgd~i~i~~i 185 (190)
T Consensus 184 i~lai~aL~~~~~~---~~~~iev~vi 207 (207)
T cd03755 184 IKLAIKALLEVVQS---GSKNIELAVM 207 (207)
T ss_pred HHHHHHHHHHHHHC---CCCCEEEEEC
T ss_conf 99999999999856---8984079969