HHsearch alignment for GI: 254780828 and conserved domain: cd03757
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.1e-37 Score=255.55 Aligned_cols=180 Identities=19% Similarity=0.205 Sum_probs=157.9
Q ss_pred CCCEEECCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--C
Q ss_conf 78177637179999979979998136545053677445105798159759997313058899999999999998536--6
Q gi|254780828|r 8 HYAVKMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--Q 85 (190)
Q Consensus 8 ~~~~~~~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~ 85 (190)
T Consensus 1 ~~py~~nGtTvigi~~~dgVvlAaD~r~s~g~~i~~~~~~Ki~~i~~~~~~~-~sG~~aD~q~l~~~l~~~~~~~~~~~~ 79 (212)
T cd03757 1 FSPYTDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLG-SSGFQADILALTKRLKARIKMYKYSHN 79 (212)
T ss_pred CCCCCCCCCEEEEEEECCEEEEEEECCCCCCCEEECCCCCCEEEECCCEEEE-ECCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9897788800899996999999990786647776527656379947968999-434578899999999999999999878
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCE-----EEECCCC-CCEEEEECCCCCEECCCEEEEECCHHHHHHHHHH---------
Q ss_conf 563067999999761122201310-----4513787-6469980586311413279960642345788985---------
Q gi|254780828|r 86 LLRSSVELAKDWRMDKYLRNLEAM-----ILIADKT-ITLVITGMGDVLEPENGVMAIGSGGSYALSAARA--------- 150 (190)
Q Consensus 86 ~~~~~~~~~~~~~~~~y~~~~~~~-----~~~~~~~-~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~--------- 150 (190)
T Consensus 80 ~~~~~~~~a~~l~~~ly~~R~~P~~v~~lvaG~D~~g~p~ly~~D~~Gs~~~~~~~a~GsGs~~a~~iLd~~~~~k~~~~ 159 (212)
T cd03757 80 KEMSTEAIAQLLSTILYSRRFFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNN 159 (212)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCEEEEEECCCCCEEECCEEEEECCHHHHHHHHHHHHHCCCCCC
T ss_conf 98899999999999998606898502899999848998289998899856745879990489999999865410135444
Q ss_pred HHCCCCCH---HHHHHHHHHHHHCCCEEECCCEEEEEEECC
Q ss_conf 20789998---999999999754011022595699999417
Q gi|254780828|r 151 LMSTQNSA---EEIARKAMSIAADICVYTNHNIVLETLKVG 188 (190)
Q Consensus 151 ~y~~~~sa---~ela~~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190)
T Consensus 160 ~~~~dmt~eeA~~l~~~al~~~~~RD~~sg~~~~v~iItkd 200 (212)
T cd03757 160 VERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKD 200 (212)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf 57799899999999999999999737778991799999789