HHsearch alignment for GI: 254780828 and conserved domain: cd03761
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.1e-37 Score=255.51 Aligned_cols=172 Identities=23% Similarity=0.184 Sum_probs=154.8
Q ss_pred EEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--CCCCCHHHH
Q ss_conf 179999979979998136545053677445105798159759997313058899999999999998536--656306799
Q gi|254780828|r 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--QLLRSSVEL 93 (190)
Q Consensus 16 TTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~~~~~~~~~ 93 (190)
T Consensus 1 TT~igi~~~dGVvlAaD~r~s~g~~i~~~~~~KI~~i~d~~~~~-~sG~~aD~~~l~~~l~~~~~~y~~~~~~~~sv~~~ 79 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGT-MAGGAADCQYWERVLGRECRLYELRNKERISVAAA 79 (188)
T ss_pred CCEEEEEECCEEEEEEECCCCCCCEEECCCCCCEEEECCCEEEE-ECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 92899997998999991775546568737865279936988999-15746879999999999999999986999999999
Q ss_pred HHHHHHHHHHHHCCC-----EEEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHH---HHHHHH
Q ss_conf 999976112220131-----045137876469980586311413279960642345788985207899989---999999
Q gi|254780828|r 94 AKDWRMDKYLRNLEA-----MILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAE---EIARKA 165 (190)
Q Consensus 94 ~~~~~~~~y~~~~~~-----~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~---ela~~A 165 (190)
T Consensus 80 a~~ls~~~y~~r~~~~~v~~iiaG~D~~g~~l~~~D~~G~~~~~~~~a~GsGs~~a~~~ld~~yk~dmt~eea~~l~~~a 159 (188)
T cd03761 80 SKLLSNMLYQYKGMGLSMGTMICGWDKTGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYDLARRA 159 (188)
T ss_pred HHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEECCCCEEEECCCEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 99999999960699962899999973999889999489706775734348857999999996468997999999999999
Q ss_pred HHHHHCCCEEECCCEEEEEEECC
Q ss_conf 99754011022595699999417
Q gi|254780828|r 166 MSIAADICVYTNHNIVLETLKVG 188 (190)
Q Consensus 166 l~~A~erDvyTgd~i~i~~i~~~ 188 (190)
T Consensus 160 l~~a~~rD~~sG~~i~v~vItkd 182 (188)
T cd03761 160 IYHATHRDAYSGGNVNLYHVRED 182 (188)
T ss_pred HHHHHHHCCCCCCCEEEEEECCC
T ss_conf 99999854546896799999888