HHsearch alignment for GI: 254780828 and conserved domain: cd03762
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.5e-35 Score=242.14 Aligned_cols=172 Identities=20% Similarity=0.109 Sum_probs=149.5
Q ss_pred EEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHC--CCCCCCHHHH
Q ss_conf 17999997997999813654505367744510579815975999731305889999999999999853--6656306799
Q gi|254780828|r 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYP--NQLLRSSVEL 93 (190)
Q Consensus 16 TTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~--~~~~~~~~~~ 93 (190)
T Consensus 1 TTvvgi~~~~GVilAaD~r~s~g~~~~~~~~~KI~~i~~~~~~~-~sG~~aD~~~l~~~l~~~~~~y~~~~~~~~~~~~~ 79 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCC-RSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTA 79 (188)
T ss_pred CCEEEEEECCEEEEEECCCCCCCCEEECCCCCCEEEECCCEEEE-ECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 91999997997999983742447864337657479964857999-60657889999999999999999986899899999
Q ss_pred HHHHHHHHHHHHCCC----EEEECCC-CCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHH---HHHHHH
Q ss_conf 999976112220131----0451378-76469980586311413279960642345788985207899989---999999
Q gi|254780828|r 94 AKDWRMDKYLRNLEA----MILIADK-TITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAE---EIARKA 165 (190)
Q Consensus 94 ~~~~~~~~y~~~~~~----~~~~~~~-~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~---ela~~A 165 (190)
T Consensus 80 a~~ls~~ly~~r~~~~~~~ivaG~D~~~~~~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~k~~ms~eeA~~L~~~a 159 (188)
T cd03762 80 ASLFKNLCYNYKEMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKFVKNA 159 (188)
T ss_pred HHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEEEECCCCCEEECCEEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 99999997526887526789971148899689999799966870589992789999999996367998999999999999
Q ss_pred HHHHHCCCEEECCCEEEEEEECC
Q ss_conf 99754011022595699999417
Q gi|254780828|r 166 MSIAADICVYTNHNIVLETLKVG 188 (190)
Q Consensus 166 l~~A~erDvyTgd~i~i~~i~~~ 188 (190)
T Consensus 160 l~~a~~rD~~sg~~i~i~~Itkd 182 (188)
T cd03762 160 LSLAMSRDGSSGGVIRLVIITKD 182 (188)
T ss_pred HHHHHHHCCCCCCCEEEEEECCC
T ss_conf 99999847567896799999688