HHsearch alignment for GI: 254780828 and conserved domain: cd03762

>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00  E-value=1.5e-35  Score=242.14  Aligned_cols=172  Identities=20%  Similarity=0.109  Sum_probs=149.5

Q ss_pred             EEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHC--CCCCCCHHHH
Q ss_conf             17999997997999813654505367744510579815975999731305889999999999999853--6656306799
Q gi|254780828|r   16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYP--NQLLRSSVEL   93 (190)
Q Consensus        16 TTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~--~~~~~~~~~~   93 (190)
T Consensus         1 TTvvgi~~~~GVilAaD~r~s~g~~~~~~~~~KI~~i~~~~~~~-~sG~~aD~~~l~~~l~~~~~~y~~~~~~~~~~~~~   79 (188)
T cd03762           1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCC-RSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTA   79 (188)
T ss_pred             CCEEEEEECCEEEEEECCCCCCCCEEECCCCCCEEEECCCEEEE-ECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf             91999997997999983742447864337657479964857999-60657889999999999999999986899899999


Q ss_pred             HHHHHHHHHHHHCCC----EEEECCC-CCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHH---HHHHHH
Q ss_conf             999976112220131----0451378-76469980586311413279960642345788985207899989---999999
Q gi|254780828|r   94 AKDWRMDKYLRNLEA----MILIADK-TITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAE---EIARKA  165 (190)
Q Consensus        94 ~~~~~~~~y~~~~~~----~~~~~~~-~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~---ela~~A  165 (190)
T Consensus        80 a~~ls~~ly~~r~~~~~~~ivaG~D~~~~~~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~k~~ms~eeA~~L~~~a  159 (188)
T cd03762          80 ASLFKNLCYNYKEMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKFVKNA  159 (188)
T ss_pred             HHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEEEECCCCCEEECCEEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             99999997526887526789971148899689999799966870589992789999999996367998999999999999


Q ss_pred             HHHHHCCCEEECCCEEEEEEECC
Q ss_conf             99754011022595699999417
Q gi|254780828|r  166 MSIAADICVYTNHNIVLETLKVG  188 (190)
Q Consensus       166 l~~A~erDvyTgd~i~i~~i~~~  188 (190)
T Consensus       160 l~~a~~rD~~sg~~i~i~~Itkd  182 (188)
T cd03762         160 LSLAMSRDGSSGGVIRLVIITKD  182 (188)
T ss_pred             HHHHHHHCCCCCCCEEEEEECCC
T ss_conf             99999847567896799999688