HHsearch alignment for GI: 254780828 and conserved domain: cd03765
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=98.23 E-value=4.9e-05 Score=51.31 Aligned_cols=165 Identities=21% Similarity=0.246 Sum_probs=103.3
Q ss_pred EEEEEEEECCEEEEEECCCCCCC-CEEEECCCEEEEEE---CCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCC---
Q ss_conf 17999997997999813654505-36774451057981---597599973130588999999999999985366563---
Q gi|254780828|r 16 TTILTVRKDGVVVIAGDGQVSLG-QTVMKANARKVRRL---GKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQLLR--- 88 (190)
Q Consensus 16 TTivgi~~~dgVviAaDtR~S~G-~~v~sr~~~KI~~i---~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~~~~--- 88 (190)
T Consensus 1 TYCvgi~l~~GLVf~SDsRTNAGvD~ist--~rKm~~~~~~g~R~ivlltaGNLattQ~Vi~~l~~~~~~~~~~~l~~~~ 78 (236)
T cd03765 1 TYCLGIKLDAGLVFASDSRTNAGVDNIST--YRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAP 78 (236)
T ss_pred CEEEEEEECCCEEEEECCCCCCCCCCHHH--CEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 95799991688699973774457541200--2214885379978999976786088999999999985158888834456
Q ss_pred CHHHHHHHH----HHHH-----HH----HHCCCE-EEE--CCCCCCEEEEECCCCCE----ECCCEEEEECCHHHHHHHH
Q ss_conf 067999999----7611-----22----201310-451--37876469980586311----4132799606423457889
Q gi|254780828|r 89 SSVELAKDW----RMDK-----YL----RNLEAM-ILI--ADKTITLVITGMGDVLE----PENGVMAIGSGGSYALSAA 148 (190)
Q Consensus 89 ~~~~~~~~~----~~~~-----y~----~~~~~~-~~~--~~~~~~~~~~~d~~g~~----~~~~~~a~GSGs~~A~g~L 148 (190)
T Consensus 79 ~m~~aA~~vG~~~r~v~~~~~~~l~~~~~~f~as~IlGGQI~g~~p~LflIYpeGNfIeas~dtPf~QIGE-tKYGKPIL 157 (236)
T cd03765 79 TMFDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPIL 157 (236)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCEEEEEECCCCEEECCCCCCEEEECC-CCCCCCEE
T ss_conf 89999999999999999974566764577624799997316799843899936986186069996588546-56798538
Q ss_pred HHHHCCCCCHHHHHHHHHHH---H----------HCCCEEECCCEEEE
Q ss_conf 85207899989999999997---5----------40110225956999
Q gi|254780828|r 149 RALMSTQNSAEEIARKAMSI---A----------ADICVYTNHNIVLE 183 (190)
Q Consensus 149 e~~y~~~~sa~ela~~Al~~---A----------~erDvyTgd~i~i~ 183 (190)
T Consensus 158 DR~i~~~~sl~~A~K~aLvSfDST~rSNlSVG~PiDl~vY~~dsl~~~ 205 (236)
T cd03765 158 DRVITPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDSLQVG 205 (236)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCC
T ss_conf 853579999999999877712555542267689826999977975413