HHsearch results for GI: 254780828 and protein with PDBid: 1iru_A
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
Probab=99.94 E-value=1e-25 Score=179.25 Aligned_cols=173 Identities=15% Similarity=0.044 Sum_probs=136.4
Q ss_pred ECCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--CCCCCH
Q ss_conf 637179999979979998136545053677445105798159759997313058899999999999998536--656306
Q gi|254780828|r 13 MHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--QLLRSS 90 (190)
Q Consensus 13 ~~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~~~~~~ 90 (190)
..|||+|||+++||||||+|+|++.+. +..++.+||++|++|++++ .+|.++|.+.+.+.++.++++++. ....++
T Consensus 34 ~gg~Tvigik~~dgVVlaad~r~~~~~-~~~~~~~KI~~I~~~i~~~-~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~v 111 (246)
T 1iru_A 34 QGGLTSVAVRGKDCAVIVTQKKVPDKL-LDSSTVTHLFKITENIGCV-MTGMTADSRSQVQRARYEAANWKYKYGYEIPV 111 (246)
T ss_dssp TTCCEEEEEECSSEEEEEEECCCCCSS-BCGGGCCSEEESSSSCEEE-EEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred CCCCEEEEEEECCEEEEEEECCCCCCC-CCCCCCCEEEEECCCEEEE-EEECHHHHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 389308999809999999966677767-1367556399935987999-76657899999999999999999971999877
Q ss_pred HHHHHHHHHH-------HHHHHCCCE--EEECCC-CCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCC--CCCH
Q ss_conf 7999999761-------122201310--451378-764699805863114132799606423457889852078--9998
Q gi|254780828|r 91 VELAKDWRMD-------KYLRNLEAM--ILIADK-TITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMST--QNSA 158 (190)
Q Consensus 91 ~~~~~~~~~~-------~y~~~~~~~--~~~~~~-~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~--~~sa 158 (190)
..+++.+... ...+++... +.+.|. .+|.+|..|+.|+..+.++.|+|+|+.+|+++||+.|++ +|+.
T Consensus 112 ~~la~~l~~~~~~~~~~~~~rP~~v~~il~G~D~~~gp~Ly~~dp~G~~~~~~~~A~G~gs~~~~~~Le~~~~~~~d~s~ 191 (246)
T 1iru_A 112 DMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTF 191 (246)
T ss_dssp HHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEEETTHHHHHHHHHHHTTSCCCCCH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCEEEEECCCCCEEEEEEEEECCCHHHHHHHHHHHCCCCCCCCH
T ss_conf 99999999999998631577773789999987289895799870880689985999567769999999975364658999
Q ss_pred H---HHHHHHHHHHHCCCEEECCCEEEEEEECC
Q ss_conf 9---99999999754011022595699999417
Q gi|254780828|r 159 E---EIARKAMSIAADICVYTNHNIVLETLKVG 188 (190)
Q Consensus 159 ~---ela~~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190)
+ +++.+||..+.++|.- .++++|.+|+.+
T Consensus 192 eeai~la~~al~~~~~~d~~-~~~iei~vi~~~ 223 (246)
T 1iru_A 192 EQTVETAITCLSTVLSIDFK-PSEIEVGVVTVE 223 (246)
T ss_dssp HHHHHHHHHHHHHHTTCCCC-TTSEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHCCCC-CCCEEEEEEEEC
T ss_conf 99999999999999836788-686799999917