HHsearch results for GI: 254780828 and protein with PDBid: 1iru_B
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
Probab=99.96 E-value=1e-27 Score=191.84 Aligned_cols=171 Identities=14% Similarity=0.035 Sum_probs=141.3
Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--CCCCCHH
Q ss_conf 37179999979979998136545053677445105798159759997313058899999999999998536--6563067
Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--QLLRSSV 91 (190)
Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~~~~~~~ 91 (190)
+|||+|||+++||||||+|+|.+++.. ..++.+|||+|+++++++ .+|..+|.+.+.+.++.+.++++. ....++.
T Consensus 30 ~Gttvigik~~dgVvlaaD~r~~~~~~-~~~~~~ki~~I~~~i~~~-~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 107 (233)
T 1iru_B 30 GGAPSVGIKAANGVVLATEKKQKSILY-DERSVHKVEPITKHIGLV-YSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTA 107 (233)
T ss_dssp TSCCEEEEECSSCEEEEEECCCCCSSB-CSTTCCSSEESSSSEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred CCCCEEEEEECCEEEEEEECCCCCCCC-CCCCCCEEEEEECCEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 698789999599999999677666773-557653399960762268-886438899999999999999999849989899
Q ss_pred HHHHHHHHHHHH-------HHCCC--EEEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHHH--
Q ss_conf 999999761122-------20131--0451378764699805863114132799606423457889852078999899--
Q gi|254780828|r 92 ELAKDWRMDKYL-------RNLEA--MILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAEE-- 160 (190)
Q Consensus 92 ~~~~~~~~~~y~-------~~~~~--~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~e-- 160 (190)
.+++.++...+. +++.. .+.+.+.++|+++..|+.|+..+.++.++|+|+.+|+++||+.|+++|+.+|
T Consensus 108 ~l~~~~~~~~~~~~~~~~~~p~~~~~ii~g~d~~~p~l~~id~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~s~eea~ 187 (233)
T 1iru_B 108 QLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAI 187 (233)
T ss_dssp HHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECSSSEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEEEECCCCEEEEECEEEECCCHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 99999999998851301468617998751135788758999278059984538754754889999986477998999999
Q ss_pred -HHHHHHHHHHCCCEEECCCEEEEEEEC
Q ss_conf -999999975401102259569999941
Q gi|254780828|r 161 -IARKAMSIAADICVYTNHNIVLETLKV 187 (190)
Q Consensus 161 -la~~Al~~A~erDvyTgd~i~i~~i~~ 187 (190)
++++||+.+.+||. +++++++.+|+.
T Consensus 188 ~l~~~~l~~~~~~d~-~~~~iev~ii~~ 214 (233)
T 1iru_B 188 HTAILTLKESFEGQM-TEDNIEVGICNE 214 (233)
T ss_dssp HHHHHHHHTTCCSCC-CSSSEEEEEEET
T ss_pred HHHHHHHHHHHHCCC-CCCCEEEEEEEC
T ss_conf 999999999985668-889789999958