HHsearch results for GI: 254780828 and protein with PDBid: 1iru_D
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
Probab=99.94 E-value=5.2e-26 Score=181.10 Aligned_cols=173 Identities=16% Similarity=0.103 Sum_probs=140.7
Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--CCCCCHH
Q ss_conf 37179999979979998136545053677445105798159759997313058899999999999998536--6563067
Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--QLLRSSV 91 (190)
Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~~~~~~~ 91 (190)
+|||+|||+++||||||+|+|++ +.++.+++.+||++|+++++++ .+|.++|.+.+.+.++.++.+++. ...+++.
T Consensus 28 ~Gttvvgik~~dgVvlaad~r~~-~~l~~~~~~~KI~~I~~~i~~~-~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~ 105 (248)
T 1iru_D 28 KGSTAVGVRGRDIVVLGVEKKSV-AKLQDERTVRKICALDDNVCMA-FAGLTADARIVINRARVECQSHRLTVEDPVTVE 105 (248)
T ss_dssp TSCCEEEECCSSEEEEEECCCCC-CSSSCGGGGCSEEESSSSCEEE-EEECHHHHHHHHHHHHHHHHHHHHHSSSCCCHH
T ss_pred CCCCEEEEEECCEEEEEEECCCC-CCCCCCCCCCCEEEECCCEEEE-EEECHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 68878999979999999966666-7554677555189915987999-998578899999999999999998649984189
Q ss_pred HHHHHHHHHHH-------HHHCCC--EEEECCC-CCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCC--HH
Q ss_conf 99999976112-------220131--0451378-764699805863114132799606423457889852078999--89
Q gi|254780828|r 92 ELAKDWRMDKY-------LRNLEA--MILIADK-TITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNS--AE 159 (190)
Q Consensus 92 ~~~~~~~~~~y-------~~~~~~--~~~~~~~-~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~s--a~ 159 (190)
.+++.+....+ .+++.. .+.+.|. ++|.+|..|+.|+..+..+.|+|+|+.+|+++|++.|+++|+ .+
T Consensus 106 ~la~~i~~~~~~~t~~~~~rP~~v~~li~G~D~~~~p~Ly~idp~Gs~~~~~~~AiG~gs~~a~~~Le~~~~~~~~~~~~ 185 (248)
T 1iru_D 106 YITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDD 185 (248)
T ss_dssp HHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEEESTTHHHHHHHHTTTCCSSTTCSHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCEEEEECCCEEEEECCEEEECCCHHHHHHHHHHHCCCCCCCCHH
T ss_conf 99999999999986303878600799999983689846997579847996170877787589999999862467663599
Q ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEECC
Q ss_conf 99999999754011022595699999417
Q gi|254780828|r 160 EIARKAMSIAADICVYTNHNIVLETLKVG 188 (190)
Q Consensus 160 ela~~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190)
++++.|+.+-.+++.-++++|+|.+|..+
T Consensus 186 ~~i~~ai~al~~~~~~~~~~iei~ii~k~ 214 (248)
T 1iru_D 186 LTIKLVIKALLEVVQSGGKNIELAVMRRD 214 (248)
T ss_dssp HHHHHHHHHHHTTSCTTSTTCCEEEEESS
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEECC
T ss_conf 99999999999985279993899999779