HHsearch results for GI: 254780828 and protein with PDBid: 1iru_F
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
Probab=99.95 E-value=1.3e-26 Score=184.96 Aligned_cols=171 Identities=13% Similarity=0.035 Sum_probs=138.7
Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--CCCCCHH
Q ss_conf 37179999979979998136545053677445105798159759997313058899999999999998536--6563067
Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--QLLRSSV 91 (190)
Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~~~~~~~ 91 (190)
+|||+|||+++||||||+|+|++++.. .+.+||++|++|++++ .+|.++|++.+.+.++.++.+++. ....++.
T Consensus 31 ~G~t~Vgik~kdgVVlaad~r~~s~l~---~~~~KI~~I~~~i~~~-~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~ 106 (263)
T 1iru_F 31 QGSATVGLKSKTHAVLVALKRAQSELA---AHQKKILHVDNHIGIS-IAGLTADARLLCNFMRQECLDSRFVFDRPLPVS 106 (263)
T ss_dssp HSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEETTEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred CCCCEEEEEECCEEEEEEECCCCCCCC---CCCCCEEEECCCEEEE-EEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 588789999699499999446666665---6511189946977999-777007589999999999999998628862188
Q ss_pred HHHHHHHHH--HH-----HHHCCC--EEEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCC--C---
Q ss_conf 999999761--12-----220131--045137876469980586311413279960642345788985207899--9---
Q gi|254780828|r 92 ELAKDWRMD--KY-----LRNLEA--MILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQN--S--- 157 (190)
Q Consensus 92 ~~~~~~~~~--~y-----~~~~~~--~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~--s--- 157 (190)
.+++.+... .| .+++.. .+.+.|..+|.+|..|+.|+..+..+.|+|+|+.+|+++||+.|+++| +
T Consensus 107 ~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~D~~gp~Ly~~Dp~Gs~~~~~~~aiG~g~~~a~~~Lek~~~~~~~~s~~e 186 (263)
T 1iru_F 107 RLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNE 186 (263)
T ss_dssp HHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECSSSCEEEESEEEESTTHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHCCCCCCCHHH
T ss_conf 99998889999887750677740699999984898879998599988986559987874878999998742267899999
Q ss_pred HHHHHHHHHHHHHCCCE-EECCCEEEEEEECC
Q ss_conf 89999999997540110-22595699999417
Q gi|254780828|r 158 AEEIARKAMSIAADICV-YTNHNIVLETLKVG 188 (190)
Q Consensus 158 a~ela~~Al~~A~erDv-yTgd~i~i~~i~~~ 188 (190)
+.+++.+||..|...|. .++++|+|.+|+.+
T Consensus 187 av~la~~aL~~~~~~~~~~~~~~iev~ii~k~ 218 (263)
T 1iru_F 187 LVKHGLRALRETLPAEQDLTTKNVSIGIVGKD 218 (263)
T ss_dssp HHHHHHHHHHTTSCTTCCCCTTTEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEEEECC
T ss_conf 99999999999864203568785699999569