HHsearch results for GI: 254780828 and protein with PDBid: 1iru_G
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
Probab=99.95 E-value=4.4e-27 Score=187.84 Aligned_cols=174 Identities=15% Similarity=0.044 Sum_probs=143.0
Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--CCCCCHH
Q ss_conf 37179999979979998136545053677445105798159759997313058899999999999998536--6563067
Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--QLLRSSV 91 (190)
Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~~~~~~~ 91 (190)
+|||+|||+++||||||+|+|++.+ ++.+++.+||++|++|++++ .+|.++|.+.+.+.++.++++++. ....++.
T Consensus 32 ~G~T~Vgik~kdgVvlaad~~~~~~-~~~~~~~~KI~~I~~~i~~~-~sG~~~D~~~l~~~~r~~~~~~~~~~g~~~~v~ 109 (254)
T 1iru_G 32 NSSTAIGIRCKDGVVFGVEKLVLSK-LYEEGSNKRLFNVDRHVGMA-VAGLLADARSLADIAREEASNFRSNFGYNIPLK 109 (254)
T ss_dssp TSCCEEEEECSSBEEEEEEEECSCT-TBCTTTTCCEEEEETTEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred CCCCEEEEEECCEEEEEEECCCCCC-CCCCCCCCEEEEECCCEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 6886899994999999996666677-71667455389812878999-878578899999999999999999858999999
Q ss_pred HHHHHHHHHHH-------HHHCCC--EEEECCC-CCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHHH-
Q ss_conf 99999976112-------220131--0451378-764699805863114132799606423457889852078999899-
Q gi|254780828|r 92 ELAKDWRMDKY-------LRNLEA--MILIADK-TITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAEE- 160 (190)
Q Consensus 92 ~~~~~~~~~~y-------~~~~~~--~~~~~~~-~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~e- 160 (190)
.+++.+....+ .+++.. .+.+.|. .+|.+|..|+.|+..+.++.|+|+|+.+|++.||+.|+++|+.+|
T Consensus 110 ~la~~l~~~~~~~t~~~~~rP~~v~~llaG~D~~~gp~Ly~idp~G~~~~~~~~a~G~gs~~a~~~Lek~y~~~ms~eea 189 (254)
T 1iru_G 110 HLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDI 189 (254)
T ss_dssp HHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHTTSCGGGCCHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCEEEEECCCCCEEEECEEEECCCCHHHHHHHHHHCCCCCCHHHH
T ss_conf 99999999999973533766765899999886999838999869976784078998686789999999744689999999
Q ss_pred --HHHHHHHHHHCCCEEECCCEEEEEEECCC
Q ss_conf --99999997540110225956999994178
Q gi|254780828|r 161 --IARKAMSIAADICVYTNHNIVLETLKVGD 189 (190)
Q Consensus 161 --la~~Al~~A~erDvyTgd~i~i~~i~~~~ 189 (190)
++.+||..+.+.+.-++.++++.+|+.+.
T Consensus 190 i~l~~~~l~~~~~~~~~~~~~iei~~v~~~~ 220 (254)
T 1iru_G 190 VKEVAKIIYIVHDEVKDKAFELELSWVGELT 220 (254)
T ss_dssp HHHHHHHHHHHSCSSSSCCEEEEEEECBTTT
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEEEECC
T ss_conf 9999999999975235887358999999448