HHsearch results for GI: 254780828 and protein with PDBid: 1iru_H
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
Probab=100.00 E-value=1.4e-32 Score=222.12 Aligned_cols=172 Identities=19% Similarity=0.135 Sum_probs=147.8
Q ss_pred EEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHC--CCCCCCHHHH
Q ss_conf 17999997997999813654505367744510579815975999731305889999999999999853--6656306799
Q gi|254780828|r 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYP--NQLLRSSVEL 93 (190)
Q Consensus 16 TTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~--~~~~~~~~~~ 93 (190)
||+|||+++||||||+|+|+|+|+++.+++.+||++|+++++++ .+|..+|++.+.+.++.++++++ .....++...
T Consensus 1 TTivgi~~~dgVviaaD~r~t~g~~i~~~~~~KI~~i~~~i~~~-~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 79 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCC-RSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTA 79 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHH
T ss_pred CEEEEEEECCEEEEEECCCCCCCCEEECCCCCEEEECCCCEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 94999998999999988864638776448765399937974999-85245889999999999999999870898618999
Q ss_pred HHHHHHHHHHHH--CCC--EEEECC-CCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCC---HHHHHHHH
Q ss_conf 999976112220--131--045137-8764699805863114132799606423457889852078999---89999999
Q gi|254780828|r 94 AKDWRMDKYLRN--LEA--MILIAD-KTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNS---AEEIARKA 165 (190)
Q Consensus 94 ~~~~~~~~y~~~--~~~--~~~~~~-~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~s---a~ela~~A 165 (190)
++.++...|.++ +.. .+.+.| .+++.++..|+.|+..+.+|.|+|||+.+|+++|++.|+++|+ |.+++++|
T Consensus 80 a~~l~~~l~~~~~p~~~~~llaG~D~~~~~~l~~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~mt~~eA~~l~~~a 159 (205)
T 1iru_H 80 ASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANA 159 (205)
T ss_dssp HHHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEECCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 99999999851576348999976646898389998899977872189996875999999987600798999999999999
Q ss_pred HHHHHCCCEEECCCEEEEEEECC
Q ss_conf 99754011022595699999417
Q gi|254780828|r 166 MSIAADICVYTNHNIVLETLKVG 188 (190)
Q Consensus 166 l~~A~erDvyTgd~i~i~~i~~~ 188 (190)
|..|.+||++||++++|.+|+.+
T Consensus 160 l~~a~~~D~~sg~~v~v~~i~k~ 182 (205)
T 1iru_H 160 LALAMERDGSSGGVIRLAAIAES 182 (205)
T ss_dssp HHHHHHHBTTCCSCEEEEEEETT
T ss_pred HHHHHHHCCCCCCCEEEEEEECC
T ss_conf 99999636777996899999389