HHsearch results for GI: 254780828 and protein with PDBid: 1iru_H

>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
Probab=100.00  E-value=1.4e-32  Score=222.12  Aligned_cols=172  Identities=19%  Similarity=0.135  Sum_probs=147.8

Q ss_pred             EEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHC--CCCCCCHHHH
Q ss_conf             17999997997999813654505367744510579815975999731305889999999999999853--6656306799
Q gi|254780828|r   16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYP--NQLLRSSVEL   93 (190)
Q Consensus        16 TTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~--~~~~~~~~~~   93 (190)
                      ||+|||+++||||||+|+|+|+|+++.+++.+||++|+++++++ .+|..+|++.+.+.++.++++++  .....++...
T Consensus         1 TTivgi~~~dgVviaaD~r~t~g~~i~~~~~~KI~~i~~~i~~~-~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~   79 (205)
T 1iru_H            1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCC-RSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTA   79 (205)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHH
T ss_pred             CEEEEEEECCEEEEEECCCCCCCCEEECCCCCEEEECCCCEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf             94999998999999988864638776448765399937974999-85245889999999999999999870898618999


Q ss_pred             HHHHHHHHHHHH--CCC--EEEECC-CCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCC---HHHHHHHH
Q ss_conf             999976112220--131--045137-8764699805863114132799606423457889852078999---89999999
Q gi|254780828|r   94 AKDWRMDKYLRN--LEA--MILIAD-KTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNS---AEEIARKA  165 (190)
Q Consensus        94 ~~~~~~~~y~~~--~~~--~~~~~~-~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~s---a~ela~~A  165 (190)
                      ++.++...|.++  +..  .+.+.| .+++.++..|+.|+..+.+|.|+|||+.+|+++|++.|+++|+   |.+++++|
T Consensus        80 a~~l~~~l~~~~~p~~~~~llaG~D~~~~~~l~~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~mt~~eA~~l~~~a  159 (205)
T 1iru_H           80 ASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANA  159 (205)
T ss_dssp             HHHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEECCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             99999999851576348999976646898389998899977872189996875999999987600798999999999999


Q ss_pred             HHHHHCCCEEECCCEEEEEEECC
Q ss_conf             99754011022595699999417
Q gi|254780828|r  166 MSIAADICVYTNHNIVLETLKVG  188 (190)
Q Consensus       166 l~~A~erDvyTgd~i~i~~i~~~  188 (190)
                      |..|.+||++||++++|.+|+.+
T Consensus       160 l~~a~~~D~~sg~~v~v~~i~k~  182 (205)
T 1iru_H          160 LALAMERDGSSGGVIRLAAIAES  182 (205)
T ss_dssp             HHHHHHHBTTCCSCEEEEEEETT
T ss_pred             HHHHHHHCCCCCCCEEEEEEECC
T ss_conf             99999636777996899999389