HHsearch results for GI: 254780828 and protein with PDBid: 1iru_J
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
Probab=100.00 E-value=7e-32 Score=217.83 Aligned_cols=179 Identities=14% Similarity=0.159 Sum_probs=151.8
Q ss_pred CCEEECCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHC--CCC
Q ss_conf 817763717999997997999813654505367744510579815975999731305889999999999999853--665
Q gi|254780828|r 9 YAVKMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYP--NQL 86 (190)
Q Consensus 9 ~~~~~~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~--~~~ 86 (190)
.++++||||+|||+++||||||+|+|+|.|.++.+++.+||++|+++++++ ++|..+|++.+.+.++.++++++ ...
T Consensus 2 ~~~~~nG~Tvigi~~~dgVvlaaD~r~t~~~~i~~~~~~Ki~~I~~~i~~~-~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 80 (205)
T 1iru_J 2 SIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIG-LAGLATDVQTVAQRLKFRLNLYELKEGR 80 (205)
T ss_dssp CCTTSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEE-CCSCHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCEEEEEEECCEEEEEECCCCCCCCEEECCCCCEEEEECCCEEEE-EECCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 743126743999998999999998875669766527654699957982899-7238178999999999988776665155
Q ss_pred CCCHHHHHHHHHHHHHHHHCCC-----EEEECCCC--CCEEEEECCCCC-EECCCEEEEECCHHHHHHHHHHHHCCCCCH
Q ss_conf 6306799999976112220131-----04513787--646998058631-141327996064234578898520789998
Q gi|254780828|r 87 LRSSVELAKDWRMDKYLRNLEA-----MILIADKT--ITLVITGMGDVL-EPENGVMAIGSGGSYALSAARALMSTQNSA 158 (190)
Q Consensus 87 ~~~~~~~~~~~~~~~y~~~~~~-----~~~~~~~~--~~~~~~~d~~g~-~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa 158 (190)
..++..+++.+....|.++..+ .+.+.|.+ .++++..|+.+. .++..|.|.|+|+.+++++||+.|+++|+.
T Consensus 81 ~~~~~~la~~l~~~~~~~~~~p~~~~~liaG~d~~~~~~~l~~~d~~g~~~~~~~~~a~G~g~~~~~~~le~~~~~~mt~ 160 (205)
T 1iru_J 81 QIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDP 160 (205)
T ss_dssp CCCHHHHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCH
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEEEEECCCCCEEEECCEEEECCCHHHHHHHHHHHCCCCCCH
T ss_conf 65417999999999886326883378999998579981799997399643562226674475599999999743334678
Q ss_pred HH---HHHHHHHHHHCCCEEECCCEEEEEEECC
Q ss_conf 99---9999999754011022595699999417
Q gi|254780828|r 159 EE---IARKAMSIAADICVYTNHNIVLETLKVG 188 (190)
Q Consensus 159 ~e---la~~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190)
+| ++++||..|.+||++||++++|.+|+.+
T Consensus 161 ~ea~~l~~~~l~~~~~rd~~sg~~v~v~ii~kd 193 (205)
T 1iru_J 161 DHLFETISQAMLNAVDRDAVSGMGVIVHIIEKD 193 (205)
T ss_dssp HHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf 999999999999998644668991899999389