HHsearch results for GI: 254780828 and protein with PDBid: 1iru_J

>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
Probab=100.00  E-value=7e-32  Score=217.83  Aligned_cols=179  Identities=14%  Similarity=0.159  Sum_probs=151.8

Q ss_pred             CCEEECCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHC--CCC
Q ss_conf             817763717999997997999813654505367744510579815975999731305889999999999999853--665
Q gi|254780828|r    9 YAVKMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYP--NQL   86 (190)
Q Consensus         9 ~~~~~~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~--~~~   86 (190)
                      .++++||||+|||+++||||||+|+|+|.|.++.+++.+||++|+++++++ ++|..+|++.+.+.++.++++++  ...
T Consensus         2 ~~~~~nG~Tvigi~~~dgVvlaaD~r~t~~~~i~~~~~~Ki~~I~~~i~~~-~sG~~~D~~~l~~~~~~~~~~~~~~~~~   80 (205)
T 1iru_J            2 SIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIG-LAGLATDVQTVAQRLKFRLNLYELKEGR   80 (205)
T ss_dssp             CCTTSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEE-CCSCHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCCEEEEEEECCEEEEEECCCCCCCCEEECCCCCEEEEECCCEEEE-EECCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             743126743999998999999998875669766527654699957982899-7238178999999999988776665155


Q ss_pred             CCCHHHHHHHHHHHHHHHHCCC-----EEEECCCC--CCEEEEECCCCC-EECCCEEEEECCHHHHHHHHHHHHCCCCCH
Q ss_conf             6306799999976112220131-----04513787--646998058631-141327996064234578898520789998
Q gi|254780828|r   87 LRSSVELAKDWRMDKYLRNLEA-----MILIADKT--ITLVITGMGDVL-EPENGVMAIGSGGSYALSAARALMSTQNSA  158 (190)
Q Consensus        87 ~~~~~~~~~~~~~~~y~~~~~~-----~~~~~~~~--~~~~~~~d~~g~-~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa  158 (190)
                      ..++..+++.+....|.++..+     .+.+.|.+  .++++..|+.+. .++..|.|.|+|+.+++++||+.|+++|+.
T Consensus        81 ~~~~~~la~~l~~~~~~~~~~p~~~~~liaG~d~~~~~~~l~~~d~~g~~~~~~~~~a~G~g~~~~~~~le~~~~~~mt~  160 (205)
T 1iru_J           81 QIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDP  160 (205)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCH
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEEEEECCCCCEEEECCEEEECCCHHHHHHHHHHHCCCCCCH
T ss_conf             65417999999999886326883378999998579981799997399643562226674475599999999743334678


Q ss_pred             HH---HHHHHHHHHHCCCEEECCCEEEEEEECC
Q ss_conf             99---9999999754011022595699999417
Q gi|254780828|r  159 EE---IARKAMSIAADICVYTNHNIVLETLKVG  188 (190)
Q Consensus       159 ~e---la~~Al~~A~erDvyTgd~i~i~~i~~~  188 (190)
                      +|   ++++||..|.+||++||++++|.+|+.+
T Consensus       161 ~ea~~l~~~~l~~~~~rd~~sg~~v~v~ii~kd  193 (205)
T 1iru_J          161 DHLFETISQAMLNAVDRDAVSGMGVIVHIIEKD  193 (205)
T ss_dssp             HHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESS
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf             999999999999998644668991899999389