HHsearch results for GI: 254780828 and protein with PDBid: 1j2q_H
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=99.98 E-value=1.3e-30 Score=209.88 Aligned_cols=172 Identities=17% Similarity=0.079 Sum_probs=148.1
Q ss_pred EEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--CCCCCHHHH
Q ss_conf 179999979979998136545053677445105798159759997313058899999999999998536--656306799
Q gi|254780828|r 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--QLLRSSVEL 93 (190)
Q Consensus 16 TTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~~~~~~~~~ 93 (190)
||+|||+++||||||||+|+|.|.++.+++.+||++|+++++++ ++|..+|.+.+.+.++.+++.++. ....++..+
T Consensus 1 TT~vgi~~~dgVvlaaD~r~s~~~~~~~~~~~KI~~i~~~i~~~-~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 79 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMT-TAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAI 79 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred CEEEEEEECCEEEEEECCCCCCCCEEECCCCCEEEEECCCEEEE-ECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 91999998999999986876658765068756299967982898-32560789999999999987777504898769999
Q ss_pred HHHHHHHHHHHHCCC-----EEEECCCCCCEEEEECCCCCEE-CCCEEEEECCHHHHHHHHHHHHCCCCCH---HHHHHH
Q ss_conf 999976112220131-----0451378764699805863114-1327996064234578898520789998---999999
Q gi|254780828|r 94 AKDWRMDKYLRNLEA-----MILIADKTITLVITGMGDVLEP-ENGVMAIGSGGSYALSAARALMSTQNSA---EEIARK 164 (190)
Q Consensus 94 ~~~~~~~~y~~~~~~-----~~~~~~~~~~~~~~~d~~g~~~-~~~~~a~GSGs~~A~g~Le~~y~~~~sa---~ela~~ 164 (190)
++.++...+.+++.| .+.+.|..+|.++..|+.|... ..+|+|+|||+.+|+++|++.|+++|+. .+++++
T Consensus 80 a~~l~~~~~~~~~~p~~~~~liaG~d~~~~~l~~~d~~G~~~~~~~~~a~G~g~~~~~~~L~~~~~~~ms~~ea~~l~~~ 159 (202)
T 1j2q_H 80 ATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVR 159 (202)
T ss_dssp HHHHHHHHHHTTTSCCCEEEEEEEEETTEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCEEEEEEEECCCCCEEEEEECCCCEEEECCEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 99987888750668701278999994899789999679987871446883687189999999656799699999999999
Q ss_pred HHHHHHCCCEEECCCEEEEEEECC
Q ss_conf 999754011022595699999417
Q gi|254780828|r 165 AMSIAADICVYTNHNIVLETLKVG 188 (190)
Q Consensus 165 Al~~A~erDvyTgd~i~i~~i~~~ 188 (190)
||..|.++|.+||+++++.+|+.+
T Consensus 160 ~l~~~~~~d~~~g~~i~v~~i~~~ 183 (202)
T 1j2q_H 160 AIYSAMKRDSASGDGIDVVKITED 183 (202)
T ss_dssp HHHHHHTTCTTSCSCEEEEEECSS
T ss_pred HHHHHHHHCCCCCCEEEEEEEECC
T ss_conf 999999746888983899999889