HHsearch results for GI: 254780828 and protein with PDBid: 1q5q_A

>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=99.93  E-value=2.1e-24  Score=171.10  Aligned_cols=166  Identities=13%  Similarity=0.009  Sum_probs=126.1

Q ss_pred             CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--C-CCCCH
Q ss_conf             37179999979979998136545053677445105798159759997313058899999999999998536--6-56306
Q gi|254780828|r   14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--Q-LLRSS   90 (190)
Q Consensus        14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~-~~~~~   90 (190)
                      +|||+|||+++||||||+|+|.++        .+||++|+||++++ ++|.++|++.+.+.++.++..++.  . ...+.
T Consensus        26 ~GtT~Vgi~~~dGVvlaad~r~~s--------~~KI~~I~d~i~~~-~aG~~aD~~~l~~~~r~ea~~~~~~~~~~~~~~   96 (259)
T 1q5q_A           26 RGRSVVVLTFRDGVLFVAENPSTA--------LHKVSELYDRLGFA-AVGKYNEFENLRRAGIVHADMRGYSYDRRDVTG   96 (259)
T ss_dssp             TSCCEEEEECSSEEEEEECCSCSS--------SCSEEEEETTEEEE-EEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCH
T ss_pred             CCCCEEEEEECCEEEEEEECCCCC--------CCCEEEECCCEEEE-EECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf             688789999799799998037776--------46369974866899-704489999999999999999898638899869


Q ss_pred             HHHHHHHHH------HHHHHHCCCEE--EECC----CCCCEEEEECCCCCEE-CCCEEEEECCHHHHHHHHHHHHCCCCC
Q ss_conf             799999976------11222013104--5137----8764699805863114-132799606423457889852078999
Q gi|254780828|r   91 VELAKDWRM------DKYLRNLEAMI--LIAD----KTITLVITGMGDVLEP-ENGVMAIGSGGSYALSAARALMSTQNS  157 (190)
Q Consensus        91 ~~~~~~~~~------~~y~~~~~~~~--~~~~----~~~~~~~~~d~~g~~~-~~~~~a~GSGs~~A~g~Le~~y~~~~s  157 (190)
                      ..+++....      ....+++...+  .++|    ..+|.+|..|++|+.. +..|.++|||+++|.++||+.|+++|+
T Consensus        97 ~~la~~~a~~~~~~~~~~~rP~gv~~LvaG~D~~g~~~gp~Ly~vdpsG~~~~~~~~~a~G~~s~~a~~~Le~~y~~~ms  176 (259)
T 1q5q_A           97 RSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLD  176 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEESSSHHHHHHHHHHHCCTTCC
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf             99999999999999853688855999999975778878875899889998512122103787609999999986346999


Q ss_pred             HHH---HHHHHHHHHHCCCE----EECCCEEEEEEECC
Q ss_conf             899---99999997540110----22595699999417
Q gi|254780828|r  158 AEE---IARKAMSIAADICV----YTNHNIVLETLKVG  188 (190)
Q Consensus       158 a~e---la~~Al~~A~erDv----yTgd~i~i~~i~~~  188 (190)
                      .+|   ++.+||+.+.+.|.    .+.++++|.+++.+
T Consensus       177 ~eea~~lai~aL~~~~~~~~~~~~l~~~~ieVavv~~~  214 (259)
T 1q5q_A          177 LEAAVGIAVNALRQGGAGEGEKRNVDVASLEVAVLDQS  214 (259)
T ss_dssp             HHHHHHHHHHHHTTCC--------CCSSCSEEEEEETT
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECC
T ss_conf             99999999999999732567757567342899999668