HHsearch results for GI: 254780828 and protein with PDBid: 1q5q_A
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=99.93 E-value=2.1e-24 Score=171.10 Aligned_cols=166 Identities=13% Similarity=0.009 Sum_probs=126.1
Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--C-CCCCH
Q ss_conf 37179999979979998136545053677445105798159759997313058899999999999998536--6-56306
Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--Q-LLRSS 90 (190)
Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~-~~~~~ 90 (190)
+|||+|||+++||||||+|+|.++ .+||++|+||++++ ++|.++|++.+.+.++.++..++. . ...+.
T Consensus 26 ~GtT~Vgi~~~dGVvlaad~r~~s--------~~KI~~I~d~i~~~-~aG~~aD~~~l~~~~r~ea~~~~~~~~~~~~~~ 96 (259)
T 1q5q_A 26 RGRSVVVLTFRDGVLFVAENPSTA--------LHKVSELYDRLGFA-AVGKYNEFENLRRAGIVHADMRGYSYDRRDVTG 96 (259)
T ss_dssp TSCCEEEEECSSEEEEEECCSCSS--------SCSEEEEETTEEEE-EEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCH
T ss_pred CCCCEEEEEECCEEEEEEECCCCC--------CCCEEEECCCEEEE-EECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 688789999799799998037776--------46369974866899-704489999999999999999898638899869
Q ss_pred HHHHHHHHH------HHHHHHCCCEE--EECC----CCCCEEEEECCCCCEE-CCCEEEEECCHHHHHHHHHHHHCCCCC
Q ss_conf 799999976------11222013104--5137----8764699805863114-132799606423457889852078999
Q gi|254780828|r 91 VELAKDWRM------DKYLRNLEAMI--LIAD----KTITLVITGMGDVLEP-ENGVMAIGSGGSYALSAARALMSTQNS 157 (190)
Q Consensus 91 ~~~~~~~~~------~~y~~~~~~~~--~~~~----~~~~~~~~~d~~g~~~-~~~~~a~GSGs~~A~g~Le~~y~~~~s 157 (190)
..+++.... ....+++...+ .++| ..+|.+|..|++|+.. +..|.++|||+++|.++||+.|+++|+
T Consensus 97 ~~la~~~a~~~~~~~~~~~rP~gv~~LvaG~D~~g~~~gp~Ly~vdpsG~~~~~~~~~a~G~~s~~a~~~Le~~y~~~ms 176 (259)
T 1q5q_A 97 RSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLD 176 (259)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEESSSHHHHHHHHHHHCCTTCC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 99999999999999853688855999999975778878875899889998512122103787609999999986346999
Q ss_pred HHH---HHHHHHHHHHCCCE----EECCCEEEEEEECC
Q ss_conf 899---99999997540110----22595699999417
Q gi|254780828|r 158 AEE---IARKAMSIAADICV----YTNHNIVLETLKVG 188 (190)
Q Consensus 158 a~e---la~~Al~~A~erDv----yTgd~i~i~~i~~~ 188 (190)
.+| ++.+||+.+.+.|. .+.++++|.+++.+
T Consensus 177 ~eea~~lai~aL~~~~~~~~~~~~l~~~~ieVavv~~~ 214 (259)
T 1q5q_A 177 LEAAVGIAVNALRQGGAGEGEKRNVDVASLEVAVLDQS 214 (259)
T ss_dssp HHHHHHHHHHHHTTCC--------CCSSCSEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECC
T ss_conf 99999999999999732567757567342899999668