HHsearch results for GI: 254780828 and protein with PDBid: 1q5q_H
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=4.2e-31 Score=212.97 Aligned_cols=171 Identities=22% Similarity=0.177 Sum_probs=138.7
Q ss_pred EEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--CCCCCHHHH
Q ss_conf 179999979979998136545053677445105798159759997313058899999999999998536--656306799
Q gi|254780828|r 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--QLLRSSVEL 93 (190)
Q Consensus 16 TTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~~~~~~~~~ 93 (190)
||+|||+++||||||||+|+|+|+++.+++.+||++|+++++++ ++|..+|++.+.+.++.++++++. ....++..+
T Consensus 1 TTivgIk~kdgVvlaaD~r~t~g~~i~~~~~~KI~~i~d~i~~~-~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~ 79 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAG-IAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGK 79 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred CEEEEEEECCEEEEEECCCCCCCCEEECCCCCEEEEECCCEEEE-ECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 91999998999999988875569776358765299978978999-80547889999999876423444200567648999
Q ss_pred HHHHHHHHHHH------HC--CCEEEECC------CCCCEEEEECCCCCEE--CCCEEEEECCHHHHHHHHHHHHCCCCC
Q ss_conf 99997611222------01--31045137------8764699805863114--132799606423457889852078999
Q gi|254780828|r 94 AKDWRMDKYLR------NL--EAMILIAD------KTITLVITGMGDVLEP--ENGVMAIGSGGSYALSAARALMSTQNS 157 (190)
Q Consensus 94 ~~~~~~~~y~~------~~--~~~~~~~~------~~~~~~~~~d~~g~~~--~~~~~a~GSGs~~A~g~Le~~y~~~~s 157 (190)
++.+....+.+ ++ .+.+.+.+ ..+|.+|..|+.|... +.+|+|+|||+.+|+++||+.|+++||
T Consensus 80 a~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~d~~~~~~ly~~d~~G~~~~~~~~~~a~GsG~~~a~~~Le~~~~~~ms 159 (235)
T 1q5q_H 80 ANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSD 159 (235)
T ss_dssp HHHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCTTCC
T ss_pred HHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEECCCEEEECCCEEEEECCHHHHHHHHHHHCCCCCC
T ss_conf 99999999870453334653145798853246667898559999846967874367689967889999999975568999
Q ss_pred HH---HHHHHHHHHHHCCCEEECC-------CEEEEEEEC
Q ss_conf 89---9999999975401102259-------569999941
Q gi|254780828|r 158 AE---EIARKAMSIAADICVYTNH-------NIVLETLKV 187 (190)
Q Consensus 158 a~---ela~~Al~~A~erDvyTgd-------~i~i~~i~~ 187 (190)
.+ +++++||+.|++||.+||+ ++.+.+|+.
T Consensus 160 ~eea~~la~~al~~a~~rD~~sGg~~~~~~~~~~~~~~~~ 199 (235)
T 1q5q_H 160 EETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQ 199 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEC
T ss_conf 9999999999999998624556884323443259999948