HHsearch results for GI: 254780828 and protein with PDBid: 1q5r_H

>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00  E-value=8.3e-34  Score=229.85  Aligned_cols=175  Identities=21%  Similarity=0.167  Sum_probs=140.9

Q ss_pred             ECCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCC--CCH
Q ss_conf             637179999979979998136545053677445105798159759997313058899999999999998536656--306
Q gi|254780828|r   13 MHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQLL--RSS   90 (190)
Q Consensus        13 ~~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~~~--~~~   90 (190)
                      .||||||||+|+||||||+|+|+|+|++|.+++++||++++++++++ ++|.++|++.+.+.++.++++++....  .++
T Consensus        63 ~hGTTiVai~~~dGVviAaD~r~t~g~~i~~~~~~KI~~i~d~i~i~-~aG~~aD~~~l~~~l~~e~~~y~~~~g~~~s~  141 (294)
T 1q5r_H           63 PHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAG-IAGTAGIAIELVRLFAVELEHYEKIEGVPLTF  141 (294)
T ss_dssp             CBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEE-EEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred             CCCCEEEEEEECCEEEEEECCCCCCCCEEECCCCCEEEEECCCEEEE-EEECHHHHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf             98554999998999999988865678765358765399968988999-85568999999999999888888760998668


Q ss_pred             HHHHHHHHHHHHH------HHCC--CEEEECC------CCCCEEEEECCCCCEE--CCCEEEEECCHHHHHHHHHHHHCC
Q ss_conf             7999999761122------2013--1045137------8764699805863114--132799606423457889852078
Q gi|254780828|r   91 VELAKDWRMDKYL------RNLE--AMILIAD------KTITLVITGMGDVLEP--ENGVMAIGSGGSYALSAARALMST  154 (190)
Q Consensus        91 ~~~~~~~~~~~y~------~~~~--~~~~~~~------~~~~~~~~~d~~g~~~--~~~~~a~GSGs~~A~g~Le~~y~~  154 (190)
                      ...++.+....+.      +++.  +.+.+.|      ..++.+|.+|+.|+..  ..+|+|+|||+.+|+++||+.|++
T Consensus       142 ~~~a~~la~~l~~~~~~~~~~~~v~~l~aG~d~~g~d~~~~g~L~~~D~~G~~~~~~~~~~AiGsGs~~A~~~Lek~~~~  221 (294)
T 1q5r_H          142 DGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSP  221 (294)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCEECEEEEEECCCCCCCCCCEEEEEECCCCEEEECCCEEEEECCHHHHHHHHHHHCCC
T ss_conf             89999999999752343567744011067884247767788659999547987886257689847899999999875326


Q ss_pred             CCCHHH---HHHHHHHHHHCCCEEECCC-------EEEEEEECC
Q ss_conf             999899---9999999754011022595-------699999417
Q gi|254780828|r  155 QNSAEE---IARKAMSIAADICVYTNHN-------IVLETLKVG  188 (190)
Q Consensus       155 ~~sa~e---la~~Al~~A~erDvyTgd~-------i~i~~i~~~  188 (190)
                      +|+.+|   ++++||..|+++|.+||+.       +.+.+|+-+
T Consensus       222 ~ms~eeA~~la~~AL~~a~~~D~~sGG~d~~~~~~~~v~~i~~~  265 (294)
T 1q5r_H          222 DSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQA  265 (294)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECC
T ss_conf             99999999999999999996244568854345550489999589