HHsearch results for GI: 254780828 and protein with PDBid: 1ryp_B

>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 1vsy_B ...
Probab=99.96  E-value=1.3e-27  Score=191.18  Aligned_cols=172  Identities=17%  Similarity=0.078  Sum_probs=136.7

Q ss_pred             CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHH-H--CCCCCCCH
Q ss_conf             37179999979979998136545053677445105798159759997313058899999999999998-5--36656306
Q gi|254780828|r   14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQ-Y--PNQLLRSS   90 (190)
Q Consensus        14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~-~--~~~~~~~~   90 (190)
                      +|||+|||+++||||||+|+|++.+. +.+++.+||++|+++++++ .+|.++|.+.+.+.++..... +  ......++
T Consensus        30 ~G~Tvvgik~~dgVvlaad~r~~~~~-~~~~~~~Ki~~i~~~i~~~-~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~  107 (250)
T 1ryp_B           30 QGVTSLGIKATNGVVIATEKKSSSPL-AMSETLSKVSLLTPDIGAV-YSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPT  107 (250)
T ss_dssp             TSCCEEEEEETTEEEEEEECCCSCSS-BCGGGCCSSEEEETTEEEE-EEECHHHHHHHHHHHHHHHHHTTHHHHSSCCCH
T ss_pred             CCCCEEEEEECCEEEEEEECCCCCCC-CCCCCCCCEEEECCCCEEE-EEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf             49868999959999999936766655-1556556379971662379-997343189999999999999999985989999


Q ss_pred             HHHHHHHH----HHHH---HHHCCC--EEEECCC-CCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHH-
Q ss_conf             79999997----6112---220131--0451378-76469980586311413279960642345788985207899989-
Q gi|254780828|r   91 VELAKDWR----MDKY---LRNLEA--MILIADK-TITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAE-  159 (190)
Q Consensus        91 ~~~~~~~~----~~~y---~~~~~~--~~~~~~~-~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~-  159 (190)
                      ..+++...    .+.+   .+++..  .+.+.|. .+|.+|..|+.|+..+.++.|+|||+.+|+++||+.|+++|+.+ 
T Consensus       108 ~~la~~~~~~~~~~~~~~~~rp~~v~~li~G~D~~~gp~Ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~y~~~ms~ee  187 (250)
T 1ryp_B          108 KLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELED  187 (250)
T ss_dssp             HHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCEEEEECCCEEEEECCEEEECCCHHHHHHHHHHHCCCCCCHHH
T ss_conf             99999999999997641466772689999987289996799985867999756899678509999999976458999899


Q ss_pred             --HHHHHHHHHHHCCCEEECCCEEEEEEECC
Q ss_conf             --99999999754011022595699999417
Q gi|254780828|r  160 --EIARKAMSIAADICVYTNHNIVLETLKVG  188 (190)
Q Consensus       160 --ela~~Al~~A~erDvyTgd~i~i~~i~~~  188 (190)
                        +++.+||..+.++|. +++++++.+|+.+
T Consensus       188 a~~la~~al~~~~~~d~-~~~~iev~vi~~~  217 (250)
T 1ryp_B          188 AIHIALLTLKESVEGEF-NGDTIELAIIGDE  217 (250)
T ss_dssp             HHHHHHHHHHHHCCSCC-STTTEEEEEECSC
T ss_pred             HHHHHHHHHHHHHHCCC-CCCCEEEEEEECC
T ss_conf             99999999999861668-8896899999679